Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   JFL57_RS04370 Genome accession   NZ_CP066565
Coordinates   978553..979893 (-) Length   446 a.a.
NCBI ID   WP_198987039.1    Uniprot ID   -
Organism   Histophilus somni strain ASc-MMNZ-VFA-076     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 973553..984893
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JFL57_RS04345 (JFL57_04345) - 973560..974285 (-) 726 WP_011608961.1 class I SAM-dependent methyltransferase -
  JFL57_RS04350 (JFL57_04350) gloB 974319..975020 (+) 702 WP_075293824.1 hydroxyacylglutathione hydrolase -
  JFL57_RS04355 (JFL57_04355) hemA 975131..976432 (+) 1302 WP_075293825.1 glutamyl-tRNA reductase -
  JFL57_RS04360 (JFL57_04360) - 976444..977838 (-) 1395 WP_075293826.1 MATE family efflux transporter -
  JFL57_RS04365 (JFL57_04365) - 977892..978500 (+) 609 WP_198987038.1 riboflavin synthase subunit alpha -
  JFL57_RS04370 (JFL57_04370) rarA 978553..979893 (-) 1341 WP_198987039.1 replication-associated recombination protein A Machinery gene
  JFL57_RS04375 (JFL57_04375) lolA 979959..980573 (-) 615 WP_011608967.1 outer membrane lipoprotein chaperone LolA -
  JFL57_RS04380 (JFL57_04380) - 980795..981208 (+) 414 WP_012340443.1 YhcB family protein -
  JFL57_RS04385 (JFL57_04385) - 981337..982725 (+) 1389 WP_198987040.1 Do family serine endopeptidase -
  JFL57_RS04390 (JFL57_04390) - 982810..983286 (-) 477 WP_041604159.1 low molecular weight protein-tyrosine-phosphatase -
  JFL57_RS04395 (JFL57_04395) - 983419..984141 (+) 723 WP_011608971.1 phosphotransferase -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 49954.95 Da        Isoelectric Point: 7.1341

>NTDB_id=455574 JFL57_RS04370 WP_198987039.1 978553..979893(-) (rarA) [Histophilus somni strain ASc-MMNZ-VFA-076]
MSSFSLDFSLGTFQPLAAKMRPQTLKQYCGQEHLIGAGKPLYKAIENGHIHSMIYWCPPGTGKTXLAEIIAQQIHAQVER
ISAVTAGVKEIRESVERAKQNRLMGQQTILFVDEVHRFNKSQQDAFLPHIENGTIIFIGATTENPSFELNNALLSRVKVY
ILKPLTTSNIVTVLQNAIQDAEQGLGKERLIFAENVLETLAEYVNGDARLALNCLELMVDMADETEKGKLINHHLLTEVL
GERQARFDKQGDRFYDLISALHKSIRGSAPDAALYWYARIITAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCF
TRVGAAEGERAIAQAIVYLAVAPKSNAVYVAFKQAKKLAKEMPDYDVPVHLRNAPTHLMKELGYGAEYRYAHDEPNAYAA
GEIYFPEELKNTKFYFPTDRGLEIQLKEKLARLHNLDEQSTKKRYK

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=455574 JFL57_RS04370 WP_198987039.1 978553..979893(-) (rarA) [Histophilus somni strain ASc-MMNZ-VFA-076]
ATGTCCAGCTTTTCACTTGATTTCTCTCTCGGTACATTTCAACCGTTAGCCGCAAAAATGAGACCGCAAACACTGAAGCA
ATATTGTGGCCAAGAACATTTAATCGGAGCTGGAAAGCCACTATATAAAGCCATTGAAAACGGACATATTCATTCTATGA
TTTATTGGTGCCCGCCTGGTACAGGAAAAACARCGCTGGCAGAGATTATTGCACAACAAATTCATGCTCAAGTTGAGCGT
ATTTCTGCAGTTACCGCCGGAGTGAAAGAGATTCGGGAAAGTGTTGAACGGGCAAAACAAAATCGTTTAATGGGTCAACA
AACTATTTTATTTGTTGATGAAGTTCACCGTTTTAATAAAAGCCAACAAGATGCTTTTTTGCCCCATATTGAAAATGGCA
CTATCATTTTTATAGGTGCAACCACAGAAAATCCATCATTTGAATTAAATAATGCGTTACTCTCTCGTGTCAAAGTTTAT
ATTTTGAAACCTTTAACTACATCTAATATTGTGACAGTGTTACAAAATGCTATCCAAGATGCAGAGCAAGGATTGGGAAA
AGAGCGGTTGATTTTCGCTGAAAATGTTCTTGAAACCTTAGCTGAATATGTCAATGGGGATGCCCGTTTAGCACTAAATT
GTTTAGAACTCATGGTGGATATGGCAGATGAAACAGAAAAAGGGAAATTGATTAATCATCATCTCCTAACCGAAGTATTA
GGGGAACGACAGGCTCGCTTCGACAAGCAAGGGGATCGCTTTTATGATCTAATTTCCGCTCTACATAAATCTATTCGTGG
CTCCGCTCCCGATGCTGCTTTATATTGGTATGCTAGAATTATTACTGCCGGAGGTGATCCTCTCTATGTTGCAAGGCGTT
TATTAGCTATTGCCTCCGAAGACGTAGGGAATGCCGATCCGAGAGCAATGCAAGTAGCACTTGCAGCATGGGATTGTTTT
ACTCGAGTTGGTGCAGCTGAAGGAGAACGTGCTATCGCACAAGCGATTGTATATTTAGCTGTTGCACCAAAAAGTAACGC
TGTATATGTTGCCTTTAAACAAGCAAAAAAACTCGCAAAAGAAATGCCGGATTATGATGTACCGGTACATTTACGTAATG
CACCAACTCATTTAATGAAAGAGTTGGGATATGGAGCAGAATATCGTTATGCTCATGATGAACCTAATGCCTATGCAGCA
GGAGAAATTTATTTTCCAGAAGAATTAAAAAATACGAAATTTTATTTTCCTACAGATCGTGGACTGGAAATTCAACTTAA
AGAAAAATTAGCACGATTGCATAATTTAGATGAGCAAAGCACAAAAAAACGCTATAAATAG

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(267-433)

AAA C-terminal domain (AAA_assoc_2)

(188-266)

ATPase family associated with various cellular activities (AAA) (AAA)

(54-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

38.771

94.843

0.368