Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ   Type   Machinery gene
Locus tag   JFL53_RS01520 Genome accession   NZ_CP066562
Coordinates   281199..281516 (+) Length   105 a.a.
NCBI ID   WP_012340547.1    Uniprot ID   A0A9Q6K6P7
Organism   Histophilus somni strain ASc-MMNZ-VFA-074     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 276199..286516
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JFL53_RS01480 (JFL53_01480) tolB 276839..278143 (+) 1305 WP_075320971.1 Tol-Pal system beta propeller repeat protein TolB -
  JFL53_RS01485 (JFL53_01485) pal 278153..278608 (+) 456 WP_041603993.1 peptidoglycan-associated lipoprotein Pal -
  JFL53_RS01505 (JFL53_01505) comN 279282..279809 (+) 528 WP_011608418.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  JFL53_RS01510 (JFL53_01510) comO 279858..280535 (+) 678 WP_011608419.1 type II secretion system protein J Machinery gene
  JFL53_RS01515 (JFL53_01515) comP 280538..281218 (+) 681 WP_132995094.1 DUF2572 family protein Machinery gene
  JFL53_RS01520 (JFL53_01520) comQ 281199..281516 (+) 318 WP_012340547.1 DUF5374 domain-containing protein Machinery gene
  JFL53_RS01525 (JFL53_01525) recC 281569..285003 (+) 3435 WP_132995096.1 exodeoxyribonuclease V subunit gamma -
  JFL53_RS01530 (JFL53_01530) ruvA 285082..285696 (+) 615 WP_075293664.1 Holliday junction branch migration protein RuvA Machinery gene

Sequence

Protein


Download         Length: 105 a.a.        Molecular weight: 12552.55 Da        Isoelectric Point: 9.7112

>NTDB_id=455400 JFL53_RS01520 WP_012340547.1 281199..281516(+) (comQ) [Histophilus somni strain ASc-MMNZ-VFA-074]
MIFNHYKFPQRGTSLITLLVTMMIFSTLFLFVNQWVSYQRKSAVNIYLRYQALQIAENQHQRLFLEPHFHCPHNIEQNGY
KFKINCEGKNVRVSYANQQVNLLLD

Nucleotide


Download         Length: 318 bp        

>NTDB_id=455400 JFL53_RS01520 WP_012340547.1 281199..281516(+) (comQ) [Histophilus somni strain ASc-MMNZ-VFA-074]
ATGATTTTCAACCATTATAAATTTCCTCAACGGGGTACCAGCTTGATCACGTTATTAGTCACAATGATGATATTTTCTAC
ATTATTTTTATTTGTTAATCAATGGGTTAGTTATCAAAGAAAAAGTGCGGTAAATATTTATCTACGTTATCAAGCTTTGC
AAATCGCTGAAAATCAACATCAACGCTTATTTCTAGAACCGCATTTTCATTGTCCGCATAATATCGAGCAAAACGGTTAT
AAGTTTAAGATCAATTGTGAAGGTAAGAATGTACGAGTTTCTTATGCAAATCAACAAGTAAATTTATTGCTTGATTAA

Domains

Predicted by InterProScan.

Family of unknown function (DUF5374) (DUF5374)

(62-97)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9Q6K6P7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Haemophilus influenzae Rd KW20

46.667

85.714

0.4