Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   JFL51_RS05310 Genome accession   NZ_CP066560
Coordinates   1088230..1089570 (+) Length   446 a.a.
NCBI ID   WP_075321137.1    Uniprot ID   -
Organism   Histophilus somni strain ASc-MMNZ-VFA-072     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1083230..1094570
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JFL51_RS05285 (JFL51_05285) - 1083992..1084714 (-) 723 WP_011608971.1 phosphotransferase -
  JFL51_RS05290 (JFL51_05290) - 1084847..1085323 (+) 477 WP_041604159.1 low molecular weight protein-tyrosine-phosphatase -
  JFL51_RS05295 (JFL51_05295) - 1085408..1086796 (-) 1389 WP_132994518.1 Do family serine endopeptidase -
  JFL51_RS05300 (JFL51_05300) - 1086925..1087338 (-) 414 WP_132994519.1 YhcB family protein -
  JFL51_RS05305 (JFL51_05305) lolA 1087550..1088164 (+) 615 WP_011608967.1 outer membrane lipoprotein chaperone LolA -
  JFL51_RS05310 (JFL51_05310) rarA 1088230..1089570 (+) 1341 WP_075321137.1 replication-associated recombination protein A Machinery gene
  JFL51_RS05315 (JFL51_05315) - 1089623..1090231 (-) 609 WP_011608965.1 riboflavin synthase -
  JFL51_RS05320 (JFL51_05320) - 1090285..1091679 (+) 1395 WP_132994520.1 MATE family efflux transporter -
  JFL51_RS05325 (JFL51_05325) hemA 1091691..1092992 (-) 1302 WP_132994521.1 glutamyl-tRNA reductase -
  JFL51_RS05330 (JFL51_05330) gloB 1093104..1093805 (-) 702 WP_132994522.1 hydroxyacylglutathione hydrolase -
  JFL51_RS05335 (JFL51_05335) - 1093839..1094564 (+) 726 WP_132994523.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 49948.09 Da        Isoelectric Point: 7.1420

>NTDB_id=455367 JFL51_RS05310 WP_075321137.1 1088230..1089570(+) (rarA) [Histophilus somni strain ASc-MMNZ-VFA-072]
MSTFSLDFSHSAFQPLAAKMRPQTLKQYCGQEHLIGAGKPLYKAIENGHIHSMIFWGPPGTGKTTLAEIIAQQIHAQVER
ISAVTAGVKEIRESVERAKQNRLMGQQTILFVDEVHRFNKTQQDAFLPHIENGTIIFIGATTENPSFELNNALLSRVKVY
ILKPLTTSNIVTVLQNAIQDAEQGLGKERLIFAENVLETLAEYVNGDARLALNCLELMVDMADETEKGKLINHRLLTEVL
GERQARFDKQGDRFYDLISALHKSIRGSAPDAALYWYARIITAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCF
TRVGAAEGERAIAQAIVYLAVAPKSNAVYVAFKQAKKLAKEMPDYDVPVHLRNAPTHLMKELGYGAEYRYAHDEPNAYAA
GENYFPEELKDTKFYFPTDRGLEIQLKEKLARLHNLDEQSTKKRYK

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=455367 JFL51_RS05310 WP_075321137.1 1088230..1089570(+) (rarA) [Histophilus somni strain ASc-MMNZ-VFA-072]
ATGTCCACTTTTTCACTTGATTTCTCTCACTCGGCATTTCAACCCTTAGCCGCAAAAATGAGACCGCAAACACTGAAGCA
ATATTGTGGCCAAGAACATTTAATCGGAGCTGGAAAGCCACTATATAAAGCCATTGAAAACGGACATATTCATTCTATGA
TTTTTTGGGGCCCGCCTGGTACAGGAAAAACAACGCTGGCAGAGATTATTGCACAACAAATTCATGCTCAAGTTGAGCGT
ATTTCTGCAGTTACCGCCGGAGTGAAAGAGATTCGGGAAAGTGTTGAACGGGCAAAACAAAATCGTTTAATGGGTCAACA
AACTATTTTATTTGTTGATGAAGTTCACCGTTTTAATAAAACCCAACAAGATGCTTTTTTGCCTCATATTGAAAACGGCA
CTATCATTTTTATAGGTGCAACCACAGAAAATCCATCATTTGAATTAAATAATGCGTTACTCTCTCGTGTCAAAGTTTAT
ATTTTGAAACCTTTAACTACATCTAATATTGTGACAGTGTTACAAAATGCTATCCAAGATGCAGAGCAAGGATTGGGAAA
AGAGCGGTTGATTTTCGCTGAAAATGTTCTTGAAACCTTAGCTGAATATGTCAATGGGGATGCCCGTTTAGCACTAAATT
GTTTAGAACTCATGGTTGATATGGCAGATGAAACAGAAAAAGGGAAATTGATTAATCATCGTCTCCTAACTGAAGTATTA
GGGGAACGACAGGCTCGCTTCGACAAGCAAGGGGATCGATTTTATGATCTAATTTCCGCTCTACATAAATCTATTCGTGG
CTCCGCTCCCGATGCTGCTTTATATTGGTATGCTAGAATTATTACTGCCGGAGGTGATCCTCTCTATGTTGCCAGGCGTT
TATTAGCTATTGCCTCCGAAGACGTAGGCAATGCCGATCCGAGAGCAATGCAAGTAGCACTTGCAGCATGGGATTGTTTT
ACTCGAGTTGGTGCAGCTGAAGGAGAACGTGCTATCGCACAAGCGATTGTATATTTAGCTGTTGCACCTAAAAGTAACGC
TGTATATGTTGCCTTTAAACAAGCAAAAAAACTCGCAAAAGAAATGCCGGATTATGATGTACCGGTACATTTGCGTAATG
CACCAACTCATTTAATGAAAGAGTTGGGATATGGAGCAGAATATCGTTATGCTCATGATGAACCTAATGCCTATGCGGCA
GGAGAAAATTATTTTCCAGAAGAATTAAAAGATACGAAATTTTATTTTCCTACAGATCGTGGACTGGAAATTCAACTTAA
AGAAAAATTAGCACGATTGCATAATTTAGATGAGCAAAGCACAAAAAAACGCTATAAATAG

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(188-266)

ATPase family associated with various cellular activities (AAA) (AAA)

(53-163)

MgsA AAA+ ATPase C terminal (MgsA_C)

(267-433)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

38.771

94.843

0.368