Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ   Type   Machinery gene
Locus tag   JFL51_RS01505 Genome accession   NZ_CP066560
Coordinates   280671..280925 (+) Length   84 a.a.
NCBI ID   WP_415874044.1    Uniprot ID   -
Organism   Histophilus somni strain ASc-MMNZ-VFA-072     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 275671..285925
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JFL51_RS01465 (JFL51_01465) tolB 276248..277552 (+) 1305 WP_075320971.1 Tol-Pal system beta propeller repeat protein TolB -
  JFL51_RS01470 (JFL51_01470) pal 277562..278017 (+) 456 WP_041603993.1 peptidoglycan-associated lipoprotein Pal -
  JFL51_RS01490 (JFL51_01490) comN 278691..279218 (+) 528 WP_011608418.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  JFL51_RS01495 (JFL51_01495) comO 279267..279944 (+) 678 WP_011608419.1 type II secretion system protein J Machinery gene
  JFL51_RS01500 (JFL51_01500) comP 279947..280627 (+) 681 WP_132995094.1 DUF2572 family protein Machinery gene
  JFL51_RS01505 (JFL51_01505) comQ 280671..280925 (+) 255 WP_415874044.1 DUF5374 domain-containing protein Machinery gene
  JFL51_RS01510 (JFL51_01510) recC 280978..284412 (+) 3435 WP_132995096.1 exodeoxyribonuclease V subunit gamma -
  JFL51_RS01515 (JFL51_01515) ruvA 284491..285105 (+) 615 WP_075293664.1 Holliday junction branch migration protein RuvA Machinery gene

Sequence

Protein


Download         Length: 84 a.a.        Molecular weight: 10090.60 Da        Isoelectric Point: 9.0489

>NTDB_id=455345 JFL51_RS01505 WP_415874044.1 280671..280925(+) (comQ) [Histophilus somni strain ASc-MMNZ-VFA-072]
MMIFSTLFLFVNQWVSYQRKSAVNIYLRYQALQIAENQHQRLFLEPHFHCPHNIEQNGYKFKINCEGKNVRVSYANQQVN
LLLD

Nucleotide


Download         Length: 255 bp        

>NTDB_id=455345 JFL51_RS01505 WP_415874044.1 280671..280925(+) (comQ) [Histophilus somni strain ASc-MMNZ-VFA-072]
ATGATGATATTTTCTACATTATTTTTATTTGTTAATCAATGGGTTAGTTATCAAAGAAAAAGTGCGGTAAATATTTATCT
ACGTTATCAAGCTTTGCAAATCGCTGAAAATCAACATCAACGCTTATTTCTAGAACCGCATTTTCATTGTCCGCATAATA
TCGAGCAAAACGGTTATAAGTTTAAGATCAATTGTGAAGGTAAGAATGTACGAGTTTCTTATGCAAATCAACAAGTAAAT
TTATTGCTTGATTAA

Domains

Predicted by InterProScan.

Family of unknown function (DUF5374) (DUF5374)

(40-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Haemophilus influenzae Rd KW20

45.57

94.048

0.429