Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   JFL50_RS05855 Genome accession   NZ_CP066559
Coordinates   1206539..1207822 (+) Length   427 a.a.
NCBI ID   WP_198973388.1    Uniprot ID   -
Organism   Histophilus somni strain ASc-MMNZ-VFA-071     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1201539..1212822
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JFL50_RS05830 (JFL50_05830) - 1202243..1202965 (-) 723 WP_011608971.1 phosphotransferase -
  JFL50_RS05835 (JFL50_05835) - 1203098..1203574 (+) 477 WP_041604159.1 low molecular weight protein-tyrosine-phosphatase -
  JFL50_RS05840 (JFL50_05840) - 1203659..1205047 (-) 1389 WP_132994518.1 Do family serine endopeptidase -
  JFL50_RS05845 (JFL50_05845) - 1205176..1205589 (-) 414 WP_132994519.1 YhcB family protein -
  JFL50_RS05850 (JFL50_05850) lolA 1205801..1206415 (+) 615 WP_011608967.1 outer membrane lipoprotein chaperone LolA -
  JFL50_RS05855 (JFL50_05855) rarA 1206539..1207822 (+) 1284 WP_198973388.1 replication-associated recombination protein A Machinery gene
  JFL50_RS05860 (JFL50_05860) - 1207875..1208483 (-) 609 WP_011608965.1 riboflavin synthase -
  JFL50_RS05865 (JFL50_05865) - 1208537..1209931 (+) 1395 WP_132994520.1 MATE family efflux transporter -
  JFL50_RS05870 (JFL50_05870) hemA 1209943..1211244 (-) 1302 WP_132994521.1 glutamyl-tRNA reductase -
  JFL50_RS05875 (JFL50_05875) gloB 1211356..1212057 (-) 702 WP_132994522.1 hydroxyacylglutathione hydrolase -
  JFL50_RS05880 (JFL50_05880) - 1212091..1212816 (+) 726 WP_132994523.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 427 a.a.        Molecular weight: 47880.74 Da        Isoelectric Point: 7.1061

>NTDB_id=455311 JFL50_RS05855 WP_198973388.1 1206539..1207822(+) (rarA) [Histophilus somni strain ASc-MMNZ-VFA-071]
MRPQTLKQYCGQEHLIGAGKPLYKAIENGHIHSMIFWGPPGTGKTTLAEIIAQQIHAQVERISAVTAGVKEIRESVERAK
QNRLMGQQTILFVDEVHRFNKTQQDAFLPHIENGTIIFIGATTENPSFELNNALLSRVKVYILKPLTTSNIVTVLQNAIQ
DAEQGLGKERLIFAENVLETLAEYVNGDARLALNCLELMVDMADETEKGKLINHRLLTEVLGERQARFDKQGDRFYDLIS
ALHKSIRGSAPDAALYWYARIITAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVGAAEGERAIAQAIVYL
AVAPKSNAVYVAFKQAKKLAKEMPDYDVPVHLRNAPTHLMKELGYGAEYRYAHDEPNAYAAGENYFPEELKDTKFYFPTD
RGLEIQLKEKLARLHNLDEQSTKKRYK

Nucleotide


Download         Length: 1284 bp        

>NTDB_id=455311 JFL50_RS05855 WP_198973388.1 1206539..1207822(+) (rarA) [Histophilus somni strain ASc-MMNZ-VFA-071]
ATGAGACCGCAAACACTGAAGCAATATTGTGGCCAAGAACATTTAATCGGAGCTGGAAAGCCACTATATAAAGCCATTGA
AAACGGACATATTCATTCTATGATTTTTTGGGGCCCGCCTGGTACAGGAAAAACAACGCTGGCAGAGATTATTGCACAAC
AAATTCATGCTCAAGTTGAGCGTATTTCTGCAGTTACCGCCGGAGTGAAAGAGATTCGGGAAAGTGTTGAACGGGCAAAA
CAAAATCGTTTAATGGGTCAACAAACTATTTTATTTGTTGATGAAGTTCACCGTTTTAATAAAACCCAACAAGATGCTTT
TTTGCCTCATATTGAAAACGGCACTATCATTTTTATAGGTGCAACCACAGAAAATCCATCATTTGAATTAAATAATGCGT
TACTCTCTCGTGTCAAAGTTTATATTTTGAAACCTTTAACTACATCTAATATTGTGACAGTGTTACAAAATGCTATCCAA
GATGCAGAGCAAGGATTGGGAAAAGAGCGGTTGATTTTCGCTGAAAATGTTCTTGAAACCTTAGCTGAATATGTCAATGG
GGATGCCCGTTTAGCACTAAATTGTTTAGAACTCATGGTTGATATGGCAGATGAAACAGAAAAAGGGAAATTGATTAATC
ATCGTCTCCTAACTGAAGTATTAGGGGAACGACAGGCTCGCTTCGACAAGCAAGGGGATCGATTTTATGATCTAATTTCC
GCTCTACATAAATCTATTCGTGGCTCCGCTCCCGATGCTGCTTTATATTGGTATGCTAGAATTATTACTGCCGGAGGTGA
TCCTCTCTATGTTGCCAGGCGTTTATTAGCTATTGCCTCCGAAGACGTAGGCAATGCCGATCCGAGAGCAATGCAAGTAG
CACTTGCAGCATGGGATTGTTTTACTCGAGTTGGTGCAGCTGAAGGAGAACGTGCTATCGCACAAGCGATTGTATATTTA
GCTGTTGCACCTAAAAGTAACGCTGTATATGTTGCCTTTAAACAAGCAAAAAAACTCGCAAAAGAAATGCCGGATTATGA
TGTACCGGTACATTTGCGTAATGCACCAACTCATTTAATGAAAGAGTTGGGATATGGAGCAGAATATCGTTATGCTCATG
ATGAACCTAATGCCTATGCGGCAGGAGAAAATTATTTTCCAGAAGAATTAAAAGATACGAAATTTTATTTTCCTACAGAT
CGTGGACTGGAAATTCAACTTAAAGAAAAATTAGCACGATTGCATAATTTAGATGAGCAAAGCACAAAAAAACGCTATAA
ATAG

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(169-247)

MgsA AAA+ ATPase C terminal (MgsA_C)

(248-414)

ATPase family associated with various cellular activities (AAA) (AAA)

(34-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

38.702

97.424

0.377