Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   HUW54_RS04640 Genome accession   NZ_CP054876
Coordinates   957627..958613 (+) Length   328 a.a.
NCBI ID   WP_000959289.1    Uniprot ID   -
Organism   Staphylococcus aureus strain Dresden-275757     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 952627..963613
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUW54_RS04615 (HUW54_04615) opp4B 952840..953802 (+) 963 WP_000239820.1 oligopeptide ABC transporter permease -
  HUW54_RS04620 (HUW54_04620) opp4C 953814..954695 (+) 882 WP_001180275.1 oligopeptide ABC transporter permease -
  HUW54_RS04625 (HUW54_04625) trpS 954737..955726 (-) 990 WP_000448934.1 tryptophan--tRNA ligase -
  HUW54_RS04630 (HUW54_04630) spxA 956021..956416 (+) 396 WP_000258003.1 transcriptional regulator SpxA -
  HUW54_RS04635 (HUW54_04635) mecA 956787..957506 (+) 720 WP_001217730.1 adaptor protein MecA -
  HUW54_RS04640 (HUW54_04640) coiA 957627..958613 (+) 987 WP_000959289.1 competence protein CoiA family protein Machinery gene
  HUW54_RS04645 (HUW54_04645) pepF 958661..960469 (+) 1809 WP_000082731.1 oligoendopeptidase F -
  HUW54_RS04650 (HUW54_04650) yjbH 960929..961735 (-) 807 WP_000896697.1 protease adaptor protein YjbH -
  HUW54_RS04655 (HUW54_04655) - 961758..962123 (-) 366 WP_000214070.1 truncated hemoglobin YjbI -
  HUW54_RS04660 (HUW54_04660) - 962227..962820 (-) 594 WP_000224619.1 CYTH domain-containing protein -
  HUW54_RS04665 (HUW54_04665) - 963006..963353 (+) 348 WP_001242102.1 hypothetical protein -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38776.37 Da        Isoelectric Point: 9.5881

>NTDB_id=455207 HUW54_RS04640 WP_000959289.1 957627..958613(+) (coiA) [Staphylococcus aureus strain Dresden-275757]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNETIKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSMFINPITRKL
HTFNLEKKQIMMFQQIQYLGGHKYVAEKRNAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAIYQLQ
LTDQEVVHNYGYIFPEQIYIENHPIEWQLQVDLWLKNGKSKLVSDNLNYFKLKKFIVGLESKTAIIEKLINNYLNICSDR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=455207 HUW54_RS04640 WP_000959289.1 957627..958613(+) (coiA) [Staphylococcus aureus strain Dresden-275757]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGTGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAAACGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAATCCAATCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTCGCTGA
AAAAAGGAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATATATCAATTACAG
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTGAAAATCATCCAATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAGTGACAATCTTAATTATTTTAAACTGAAAA
AGTTTATTGTTGGTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTTGTTCAGATAGA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

98.476

100

0.985
  coiA Staphylococcus aureus N315

97.866

100

0.979