Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   IGS65_RS09320 Genome accession   NZ_CP066294
Coordinates   1919482..1920267 (+) Length   261 a.a.
NCBI ID   WP_002263472.1    Uniprot ID   P59388
Organism   Streptococcus mutans strain 27-3     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1914482..1925267
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IGS65_RS09300 (IGS65_009300) - 1915236..1916621 (+) 1386 WP_342345302.1 Cof-type HAD-IIB family hydrolase -
  IGS65_RS09305 (IGS65_009305) - 1916899..1917348 (-) 450 WP_002263469.1 universal stress protein -
  IGS65_RS09310 (IGS65_009310) - 1917446..1917982 (-) 537 WP_002263470.1 biotin transporter BioY -
  IGS65_RS09315 (IGS65_009315) - 1918159..1919373 (+) 1215 WP_025988447.1 pyridoxal phosphate-dependent aminotransferase -
  IGS65_RS09320 (IGS65_009320) codY 1919482..1920267 (+) 786 WP_002263472.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  IGS65_RS09325 (IGS65_009325) - 1920269..1920820 (+) 552 WP_002263473.1 isochorismatase family cysteine hydrolase -
  IGS65_RS09330 (IGS65_009330) aspS 1921081..1922832 (+) 1752 WP_002266297.1 aspartate--tRNA ligase -
  IGS65_RS09335 (IGS65_009335) gatC 1922959..1923261 (+) 303 WP_192072386.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  IGS65_RS09340 (IGS65_009340) gatA 1923261..1924727 (+) 1467 WP_002274738.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -

Sequence

Protein


Download         Length: 261 a.a.        Molecular weight: 28970.13 Da        Isoelectric Point: 4.5032

>NTDB_id=454650 IGS65_RS09320 WP_002263472.1 1919482..1920267(+) (codY) [Streptococcus mutans strain 27-3]
MANLLSKTRRITSILQRSVESLQSDLPYNTIADQLAEIIDCNACIIDGSGIILGYAMKYKTNTDRVEEFFQAKKLPDDYV
KSASRIYDTEANLSVENDLTIFPIESKDIYPDGLTTIAPIYGGGMRLGSLIIWRNDKEFNDDDLILIEISSTVVGIQLLN
LQTENLEETIRKQTAINMAINTLSYSEMKAVAAILNELDGNEGRLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVINEGIFDKLKDYS

Nucleotide


Download         Length: 786 bp        

>NTDB_id=454650 IGS65_RS09320 WP_002263472.1 1919482..1920267(+) (codY) [Streptococcus mutans strain 27-3]
ATGGCTAATTTATTATCGAAAACGCGACGTATTACATCCATTTTACAACGCTCGGTTGAGAGCCTTCAAAGTGATTTGCC
TTATAATACGATTGCAGATCAATTGGCTGAAATTATTGATTGTAATGCTTGTATTATTGATGGTAGTGGTATTATTCTCG
GCTATGCTATGAAGTATAAAACCAATACAGATCGTGTTGAAGAATTTTTCCAAGCTAAAAAATTACCTGATGATTATGTA
AAATCGGCCAGCCGTATTTATGATACAGAAGCCAATCTGTCGGTTGAAAATGATTTGACCATTTTTCCAATTGAATCAAA
AGATATCTATCCTGATGGCTTGACGACTATTGCTCCCATCTATGGCGGCGGTATGCGTCTTGGTTCTCTTATTATCTGGC
GTAATGATAAAGAATTCAATGATGACGATTTGATTCTAATTGAGATTTCTTCTACTGTTGTTGGAATTCAATTATTGAAC
TTACAGACAGAAAATCTTGAAGAAACAATTCGTAAGCAGACTGCTATTAATATGGCGATTAATACCTTGTCTTATTCAGA
AATGAAAGCTGTCGCAGCTATTCTCAATGAATTAGATGGCAATGAAGGTCGCTTGACCGCATCGGTTATTGCTGATCGTA
TCGGTATTACACGTAGCGTGATTGTTAATGCTCTTAGAAAGTTAGAAAGTGCCGGTATTATTGAAAGTCGTTCCTTAGGT
ATGAAAGGTACTTATCTCAAAGTTATTAATGAAGGTATTTTTGATAAATTAAAGGACTATAGTTAA

Domains

Predicted by InterProScan.

CodY helix-turn-helix domain (HTH_CodY)

(202-260)

CodY GAF-like domain (CodY)

(3-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P59388

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

65.37

98.467

0.644
  codY Bacillus subtilis subsp. subtilis str. 168

48.047

98.084

0.471