Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   A7A1_RS14650 Genome accession   NC_019896
Coordinates   2851996..2852913 (-) Length   305 a.a.
NCBI ID   WP_015252359.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis str. BSP1     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 2846996..2857913
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A7A1_RS14625 (A7A1_0967) spx 2847355..2847750 (-) 396 WP_014476435.1 transcriptional regulator Spx -
  A7A1_RS14630 (A7A1_0966) yjbC 2847931..2848509 (-) 579 WP_003244921.1 GNAT family N-acetyltransferase -
  A7A1_RS14635 (A7A1_0965) yjbB 2848673..2849890 (-) 1218 WP_080019554.1 MFS transporter -
  A7A1_RS14640 oppF 2849997..2850913 (-) 917 Protein_2901 oligopeptide ABC transporter ATP-binding protein OppF -
  A7A1_RS14645 (A7A1_0963) oppD 2850915..2851991 (-) 1077 WP_015252358.1 oligopeptide ABC transporter ATP-binding protein OppD -
  A7A1_RS14650 (A7A1_0962) amiD 2851996..2852913 (-) 918 WP_015252359.1 oligopeptide ABC transporter permease OppC Regulator
  A7A1_RS14655 (A7A1_0961) oppB 2852917..2853852 (-) 936 WP_003245554.1 oligopeptide ABC transporter permease OppB -
  A7A1_RS14660 (A7A1_0960) oppA 2853960..2855597 (-) 1638 WP_015252360.1 oligopeptide ABC transporter substrate-binding protein OppA -
  A7A1_RS14665 (A7A1_0959) trpS 2856340..2857332 (+) 993 WP_003245134.1 tryptophan--tRNA ligase -

Sequence

Protein


Download         Length: 305 a.a.        Molecular weight: 33635.15 Da        Isoelectric Point: 10.2873

>NTDB_id=45449 A7A1_RS14650 WP_015252359.1 2851996..2852913(-) (amiD) [Bacillus subtilis subsp. subtilis str. BSP1]
MQNIPKNMFEPAAANAGDAEKISKKSLSLWKDAMLRFRSNKLAMVGLIIIVLIILMAIFAPMFSRYDYSTTNLLNADKPP
SKDHWFGTDDLGRDIFVRTWVGARISIFIGVAAAILDLLIGVIWGSISGFRGGRTDEIMMRIADILWAVPSLLMVILLMV
VLPKGLFTIIIAMTITGWINMARIVRGQVLQLKNQEYVLASQTLGAKTSRLLFKHIVPNAMGSILVTMTLTVPTAIFTEA
FLSYLGLGVPAPLASWGTMASDGLPALTYYPWRLFFPAGFICITMFGFNVVGDGLRDALDPKLRK

Nucleotide


Download         Length: 918 bp        

>NTDB_id=45449 A7A1_RS14650 WP_015252359.1 2851996..2852913(-) (amiD) [Bacillus subtilis subsp. subtilis str. BSP1]
ATGCAGAACATTCCAAAAAACATGTTTGAACCAGCCGCAGCGAATGCCGGCGATGCAGAAAAAATAAGTAAAAAGAGCCT
TTCCCTCTGGAAAGATGCGATGCTTCGCTTCCGCAGCAATAAGCTTGCAATGGTCGGGCTTATCATTATCGTACTTATTA
TCCTTATGGCAATTTTTGCGCCGATGTTCTCAAGGTATGATTATTCAACTACTAATCTCTTAAATGCGGATAAGCCGCCT
TCAAAAGATCACTGGTTCGGAACAGATGATCTTGGACGAGACATTTTCGTCCGTACATGGGTAGGGGCTCGAATCTCAAT
CTTTATCGGTGTTGCAGCTGCTATTCTCGATTTGCTGATCGGCGTCATTTGGGGGAGCATTTCAGGCTTCCGCGGAGGCA
GAACGGACGAAATCATGATGCGTATCGCTGATATCCTTTGGGCAGTTCCTTCATTATTAATGGTTATCTTACTGATGGTT
GTTCTTCCGAAAGGTCTATTTACGATTATTATTGCCATGACGATTACAGGCTGGATTAATATGGCCAGAATCGTGCGCGG
ACAAGTGCTGCAGCTGAAGAATCAGGAGTATGTGCTTGCTTCACAGACACTGGGTGCAAAAACATCCCGTCTTCTGTTTA
AACATATCGTGCCAAACGCAATGGGTTCTATTTTGGTCACGATGACACTGACAGTTCCTACTGCGATTTTCACAGAAGCC
TTTTTAAGCTATTTGGGACTTGGTGTTCCGGCTCCGCTGGCAAGCTGGGGAACGATGGCTTCTGACGGATTGCCTGCATT
GACCTATTATCCGTGGCGTTTATTCTTCCCTGCCGGATTTATCTGCATTACAATGTTTGGTTTCAACGTTGTCGGCGACG
GATTAAGAGACGCATTGGATCCTAAGTTACGTAAATAA

Domains

Predicted by InterProScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(121-305)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus thermophilus LMG 18311

35.922

100

0.364
  amiD Streptococcus thermophilus LMD-9

35.922

100

0.364

Multiple sequence alignment