Detailed information NTG0454450

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: H9K57_RS05260
• Genome accession: NZ_CP066246
• Coordinates: 1134495..1135784 (+)
• Length: 429 a.a.
• NCBI ID: WP_043046476.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain DHO76
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1129495..1140784

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H9K57_RS05245 (H9K57_05240)	lrp	1129994..1130488 (+)	495	WP_005378234.1	leucine-responsive transcriptional regulator Lrp	-
H9K57_RS05250 (H9K57_05245)	-	1130641..1133727 (+)	3087	WP_248377821.1	DNA translocase FtsK 4TM domain-containing protein	-
H9K57_RS05255 (H9K57_05250)	lolA	1133802..1134428 (+)	627	WP_005460060.1	outer membrane lipoprotein chaperone LolA	-
H9K57_RS05260 (H9K57_05255)	rarA	1134495..1135784 (+)	1290	WP_043046476.1	replication-associated recombination protein A	Machinery gene
H9K57_RS05265 (H9K57_05260)	serS	1135876..1137183 (+)	1308	WP_005495761.1	serine--tRNA ligase	-
H9K57_RS05270 (H9K57_05265)	-	1137380..1137646 (+)	267	WP_086584073.1	DksA/TraR family C4-type zinc finger protein	-
H9K57_RS05275 (H9K57_05270)	bioA	1137716..1138996 (-)	1281	WP_248377822.1	adenosylmethionine--8-amino-7-oxononanoate transaminase	-
H9K57_RS05280 (H9K57_05275)	bioB	1139124..1140176 (+)	1053	WP_005495747.1	biotin synthase BioB	-

Sequence

Protein

• Length: 429 a.a.
• Molecular weight: 47590.79 Da
• Isoelectric Point: 5.6959

>NTDB_id=454450 H9K57_RS05260 WP_043046476.1 1134495..1135784(+) (rarA) [Vibrio parahaemolyticus strain DHO76]
MRPQTIEQYIGQQHILGPGKPLRRALEAGHVHSMILWGPPGTGKTTLAEVAANYANAEVERVSAVTSGVKEIRAAIEKAR
ENKMAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNALLSRARVYKLTSLDKEEISLALNQAIN
DKERGLGDTPANFADNVLDRLAELVNGDARMSLNYLELLYDMAEDNAQGEKEITLKLLAEVAGEKVSRFDNKGDIWYDLI
SAVHKSIRGSNPDAALYWAARMIAAGCDPLYIARRLLAIASEDVGNADPRAMQVALSAWDCFTRVGPAEGERAIAQAIVY
LACAPKSNAVYVAWKQALTDAHNLPEYEVPYHLRNAPTSLMKDMGYGAEYRYAHDEPGAYAAGEQYLPPEMADRKYYQPT
NRGLETKIGEKLDYLAKLDANSQQKRYEK

Nucleotide

• Length: 1290 bp

>NTDB_id=454450 H9K57_RS05260 WP_043046476.1 1134495..1135784(+) (rarA) [Vibrio parahaemolyticus strain DHO76]
ATGAGACCGCAAACTATTGAGCAGTACATCGGTCAGCAACACATTCTTGGCCCGGGTAAACCCCTGCGTCGCGCGTTAGA
GGCTGGCCATGTCCACTCAATGATCCTTTGGGGGCCTCCTGGTACAGGTAAAACCACGTTAGCGGAAGTCGCTGCTAATT
ACGCCAATGCGGAAGTTGAACGTGTGTCTGCGGTGACGTCCGGTGTGAAAGAGATTCGTGCTGCAATCGAAAAAGCGCGC
GAGAACAAAATGGCGGGTCGCCGCACCATCTTGTTTGTGGATGAGGTTCATCGCTTCAACAAATCGCAACAAGATGCTTT
CTTACCACATATTGAAGATGGAACCGTCACGTTTATTGGCGCAACGACAGAGAACCCATCTTTCGAACTGAATAACGCAT
TGTTGTCTCGTGCTCGAGTCTACAAGCTGACTTCACTGGATAAAGAAGAGATCTCACTCGCACTAAATCAAGCGATTAAC
GACAAAGAACGAGGCCTGGGCGATACGCCAGCGAACTTTGCTGATAATGTGTTAGACCGTCTAGCCGAGTTGGTGAACGG
CGATGCTCGCATGTCGCTTAACTACCTTGAACTTCTCTACGATATGGCAGAGGACAATGCGCAGGGTGAAAAAGAGATAA
CACTCAAACTGCTTGCTGAAGTAGCCGGGGAGAAAGTTTCTCGCTTCGATAATAAAGGCGACATTTGGTACGATTTGATC
TCCGCTGTGCACAAATCTATTCGTGGATCAAACCCCGATGCCGCTTTGTATTGGGCTGCTCGTATGATAGCTGCAGGTTG
TGACCCACTTTACATTGCCCGTCGATTACTTGCGATAGCATCGGAAGATGTCGGCAATGCGGACCCTAGAGCGATGCAAG
TTGCACTCTCCGCGTGGGACTGTTTTACACGCGTTGGTCCAGCTGAAGGTGAGCGTGCGATTGCTCAAGCAATTGTTTAT
CTCGCGTGCGCTCCAAAGAGTAATGCCGTTTATGTTGCTTGGAAACAAGCGCTCACTGATGCACATAACTTGCCTGAATA
TGAAGTGCCGTATCACTTGCGTAATGCACCCACCAGTCTGATGAAAGACATGGGCTATGGCGCAGAATATCGATATGCTC
ACGACGAGCCGGGTGCTTATGCAGCGGGTGAGCAATATTTGCCACCAGAAATGGCGGATCGTAAGTACTATCAGCCGACA
AATCGCGGTCTAGAAACCAAAATCGGCGAAAAGTTAGATTACTTGGCTAAATTAGACGCAAATAGCCAACAAAAGCGCTA
TGAAAAGTAG

Domains

Predicted by InterProScan.

• MgsA AAA+ ATPase C terminal (MgsA_C) (249-415)

• ATPase family associated with various cellular activities (AAA) (AAA) (34-139)

• AAA C-terminal domain (AAA_assoc_2) (170-248)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	39.474	97.436	0.385