Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   A7A1_RS12705 Genome accession   NC_019896
Coordinates   2501037..2501486 (-) Length   149 a.a.
NCBI ID   WP_044052537.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis str. BSP1     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 2496037..2506486
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A7A1_RS12675 (A7A1_0521) sepM 2496116..2497141 (-) 1026 WP_015252148.1 protease DdcP Regulator
  A7A1_RS12680 (A7A1_0522) ylbK 2497143..2497925 (-) 783 WP_003232221.1 patatin family protein -
  A7A1_RS12685 (A7A1_0523) spoVV 2498106..2499332 (+) 1227 WP_015252149.1 dipicolinic acid transporter SpoVV -
  A7A1_RS12690 (A7A1_0524) coaD 2499343..2499828 (-) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  A7A1_RS12695 (A7A1_0525) rsmD 2499833..2500387 (-) 555 WP_015252150.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  A7A1_RS12700 (A7A1_0526) ylbG 2500710..2500982 (-) 273 WP_015715839.1 YlbG family protein -
  A7A1_RS12705 (A7A1_0527) ylbF 2501037..2501486 (-) 450 WP_044052537.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  A7A1_RS12710 (A7A1_0528) ylbE 2501602..2501841 (-) 240 WP_003232231.1 YlbE-like family protein -
  A7A1_RS12715 (A7A1_0529) ylbD 2501857..2502255 (-) 399 WP_003232233.1 YlbD family protein -
  A7A1_RS12720 (A7A1_0530) ylbC 2502487..2503527 (-) 1041 WP_014479713.1 CAP domain-containing protein -
  A7A1_RS12725 (A7A1_0531) ylbB 2503610..2504056 (-) 447 WP_003221362.1 CBS domain-containing protein -
  A7A1_RS12730 (A7A1_0532) ylbA 2504196..2504558 (+) 363 WP_003232238.1 YugN family protein -
  A7A1_RS12735 (A7A1_0533) ctaG 2504590..2505483 (-) 894 WP_015252153.1 cytochrome c oxidase assembly factor CtaG -
  A7A1_RS12740 (A7A1_0534) ctaF 2505510..2505842 (-) 333 WP_003232242.1 cytochrome c oxidase subunit IVB -
  A7A1_RS12745 (A7A1_0535) ctaE 2505845..2506468 (-) 624 WP_003232244.1 cytochrome c oxidase subunit III -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16942.01 Da        Isoelectric Point: 4.9284

>NTDB_id=45435 A7A1_RS12705 WP_044052537.1 2501037..2501486(-) (ylbF) [Bacillus subtilis subsp. subtilis str. BSP1]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVVDFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=45435 A7A1_RS12705 WP_044052537.1 2501037..2501486(-) (ylbF) [Bacillus subtilis subsp. subtilis str. BSP1]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGGCGGATTATTCGTTCTTTTATTAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGATAAGGTGGTTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTTGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGCTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

99.329

100

0.993

Multiple sequence alignment