Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   I33_RS15160 Genome accession   NC_017195
Coordinates   3043640..3044284 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis str. RO-NN-1     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3038640..3049284
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I33_RS15125 (I33_3253) mrpB 3039832..3040263 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  I33_RS15130 (I33_3254) mrpC 3040263..3040604 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  I33_RS15135 (I33_3255) mrpD 3040597..3042078 (+) 1482 WP_041519487.1 Na+/H+ antiporter subunit D -
  I33_RS15140 (I33_3256) mrpE 3042084..3042560 (+) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  I33_RS15145 (I33_3257) mrpF 3042560..3042844 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  I33_RS15150 (I33_3258) mnhG 3042828..3043202 (+) 375 WP_014477830.1 monovalent cation/H(+) antiporter subunit G -
  I33_RS15155 (I33_3259) yuxO 3043241..3043621 (-) 381 WP_014477831.1 hotdog fold thioesterase -
  I33_RS15160 (I33_3260) comA 3043640..3044284 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  I33_RS15165 (I33_3261) comP 3044365..3046662 (-) 2298 WP_041519489.1 histidine kinase Regulator
  I33_RS15170 (I33_3262) comX 3046670..3046831 (-) 162 WP_003241045.1 competence pheromone ComX -
  I33_RS15175 (I33_3263) - 3046846..3047706 (-) 861 WP_014477833.1 polyprenyl synthetase family protein -
  I33_RS15180 (I33_3264) degQ 3047891..3048031 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  I33_RS21070 - 3048253..3048378 (+) 126 WP_154796978.1 hypothetical protein -
  I33_RS15185 (I33_3265) - 3048492..3048860 (+) 369 WP_014477834.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=45435 I33_RS15160 WP_003220716.1 3043640..3044284(-) (comA) [Bacillus subtilis subsp. subtilis str. RO-NN-1]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=45435 I33_RS15160 WP_003220716.1 3043640..3044284(-) (comA) [Bacillus subtilis subsp. subtilis str. RO-NN-1]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATCT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTGGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAAGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTGCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCACTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCCTGACATCGATTTTCAATAAGCTGAATGTCGGTTCCCGGACGGAAGCAGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment