Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   JDY60_RS05600 Genome accession   NZ_CP066172
Coordinates   1164160..1164948 (-) Length   262 a.a.
NCBI ID   WP_200370245.1    Uniprot ID   -
Organism   Streptococcus oralis strain SF100     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1159160..1169948
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JDY60_RS05575 (JDY60_05575) vex3 1159654..1161033 (-) 1380 WP_200370244.1 ABC transporter permease subunit Vex3 -
  JDY60_RS05580 (JDY60_05580) vex2 1161089..1161736 (-) 648 WP_000173737.1 ABC transporter ATP-binding subunit Vex2 -
  JDY60_RS05585 (JDY60_05585) - 1161749..1163026 (-) 1278 WP_001068259.1 ABC transporter permease -
  JDY60_RS05595 (JDY60_05595) - 1163585..1164160 (-) 576 WP_049477942.1 cysteine hydrolase family protein -
  JDY60_RS05600 (JDY60_05600) codY 1164160..1164948 (-) 789 WP_200370245.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  JDY60_RS05605 (JDY60_05605) - 1165231..1166808 (-) 1578 WP_049505228.1 DEAD/DEAH box helicase -
  JDY60_RS05610 (JDY60_05610) - 1167157..1168473 (+) 1317 WP_200370248.1 FAD-containing oxidoreductase -
  JDY60_RS05615 (JDY60_05615) murT 1168573..1169916 (+) 1344 WP_200370249.1 lipid II isoglutaminyl synthase subunit MurT -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29697.07 Da        Isoelectric Point: 5.2441

>NTDB_id=453962 JDY60_RS05600 WP_200370245.1 1164160..1164948(-) (codY) [Streptococcus oralis strain SF100]
MAHLLEKTRKITSILKRSEEQLQDELPYNAITRQLADIIDCNACIVNNKGRLLGYFMRYKTNNDRVEQFFQTKTFPDVYV
QGANMIYDTEANLPVEHDLTIFPVESRADFPDGLTTIAPIHVSGIRLGSLIIWRNDKKFEDEDLILVEIASTVVGIQLLN
FQREEDEKNIRRRTAVTMAVNTLSYSELRAVSAILAELDGNEGQLTVSVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVLIGDIFEEVKKRDY

Nucleotide


Download         Length: 789 bp        

>NTDB_id=453962 JDY60_RS05600 WP_200370245.1 1164160..1164948(-) (codY) [Streptococcus oralis strain SF100]
ATGGCACATTTATTAGAAAAAACAAGAAAAATCACGTCTATTCTAAAGCGCTCAGAAGAGCAACTCCAAGATGAACTTCC
TTACAATGCGATCACACGCCAGTTAGCTGATATTATTGACTGTAACGCTTGTATTGTGAATAACAAGGGACGTCTCTTGG
GCTACTTTATGCGTTATAAGACCAATAATGACCGTGTAGAACAGTTTTTCCAAACTAAAACCTTCCCTGACGTCTATGTA
CAAGGGGCAAACATGATTTATGATACAGAAGCCAACCTTCCTGTTGAACATGATTTGACTATTTTCCCTGTAGAGAGCCG
TGCGGACTTTCCAGATGGTTTGACGACCATCGCTCCGATTCATGTATCAGGGATTCGTCTAGGTTCGTTGATCATTTGGC
GCAATGACAAGAAATTTGAAGATGAAGATTTGATCCTTGTCGAGATTGCGAGCACGGTTGTGGGAATTCAACTATTGAAC
TTCCAACGTGAAGAAGATGAGAAGAATATTCGCCGTCGTACTGCTGTAACCATGGCAGTCAACACCCTTTCCTATTCAGA
ACTTCGTGCCGTATCAGCTATTTTAGCTGAATTGGATGGAAATGAAGGGCAGCTGACTGTATCAGTTATTGCAGACCGTA
TTGGCATTACACGCTCAGTGATTGTCAATGCGCTTCGTAAATTGGAGTCAGCGGGAATTATTGAGAGCCGTTCACTCGGA
ATGAAGGGGACTTATCTCAAAGTTCTAATTGGTGATATTTTTGAGGAAGTGAAAAAGAGGGACTACTAA

Domains

Predicted by InterProScan.

CodY helix-turn-helix domain (HTH_CodY)

(202-258)

CodY GAF-like domain (CodY)

(3-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

63.359

100

0.634
  codY Bacillus subtilis subsp. subtilis str. 168

49.593

93.893

0.466