Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   I6I02_RS10705 Genome accession   NZ_CP066093
Coordinates   2287394..2288662 (+) Length   422 a.a.
NCBI ID   WP_049529097.1    Uniprot ID   -
Organism   Streptococcus salivarius strain FDAARGOS_1045     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2282394..2293662
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I02_RS10680 (I6I02_10680) - 2283954..2285600 (-) 1647 WP_198463586.1 hypothetical protein -
  I6I02_RS10685 (I6I02_10685) - 2285811..2286116 (-) 306 WP_049529094.1 DUF1292 domain-containing protein -
  I6I02_RS10690 (I6I02_10690) ruvX 2286224..2286643 (-) 420 WP_002887078.1 Holliday junction resolvase RuvX -
  I6I02_RS10695 (I6I02_10695) - 2286643..2286909 (-) 267 WP_002885737.1 IreB family regulatory phosphoprotein -
  I6I02_RS10700 (I6I02_10700) rpmB 2287036..2287224 (-) 189 WP_002885786.1 50S ribosomal protein L28 -
  I6I02_RS10705 (I6I02_10705) rarA 2287394..2288662 (+) 1269 WP_049529097.1 replication-associated recombination protein A Machinery gene
  I6I02_RS10720 (I6I02_10720) - 2289104..2290243 (-) 1140 WP_002885655.1 site-specific integrase -
  I6I02_RS10725 (I6I02_10725) - 2290245..2290433 (-) 189 WP_000369785.1 DUF3173 domain-containing protein -
  I6I02_RS10730 (I6I02_10730) - 2290445..2291422 (-) 978 WP_002885728.1 replication initiation protein -
  I6I02_RS11140 - 2291468..2291650 (-) 183 WP_048790917.1 hypothetical protein -
  I6I02_RS10735 (I6I02_10735) - 2291864..2292373 (+) 510 WP_198463587.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46553.97 Da        Isoelectric Point: 5.8779

>NTDB_id=453830 I6I02_RS10705 WP_049529097.1 2287394..2288662(+) (rarA) [Streptococcus salivarius strain FDAARGOS_1045]
MPDNLALRMRPRTISEVIGQKHLVGEGKIIRRMVEANMLSSMILYGPPGIGKTSIASAIAGTTKFAFRTFNATVDSKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKAKQDFLLPLLENGNIIMIGATTENPFFSVTPAIRSRVQIFELEPLSNEDIKEAIL
GVLEDKERGFDFDVQLDDDALDFIATATNGDLRSAYNSLDLAVMSTPASEDGLRHITLDTVENSLQRSYITMDKDGDGHY
DVLSALQKSIRGSDVNASLHYAARLVEAGDLPSLARRLTVIAYEDIGLANPDAQVHTVTALEAAQKVGFPEARILIANVV
VDLALSPKSNSAYMAMDAALADLRKSGNLPIPRHLRDGHYAGSKELGNAQDYKYPHAYPEKWVKQQYLPDKLRGVNYFQP
NETGKYERALGANKDRIDKLSR

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=453830 I6I02_RS10705 WP_049529097.1 2287394..2288662(+) (rarA) [Streptococcus salivarius strain FDAARGOS_1045]
ATGCCAGATAATCTTGCTCTACGCATGCGTCCACGTACAATTTCAGAGGTGATTGGTCAGAAGCATCTGGTTGGTGAAGG
TAAAATTATTCGCCGTATGGTAGAAGCGAATATGCTATCGTCAATGATTCTCTACGGGCCACCAGGAATCGGGAAGACCT
CAATAGCTAGTGCTATTGCAGGAACAACAAAATTTGCTTTTAGAACCTTTAATGCTACAGTTGATAGCAAGAAACGCCTG
CAGGAAATTGCGGAAGAGGCTAAATTTTCAGGTGGCTTAGTTCTGCTCCTAGATGAGATTCATCGTTTAGATAAAGCTAA
ACAAGACTTTTTATTACCACTCTTAGAGAATGGTAATATTATCATGATTGGGGCTACAACGGAGAATCCGTTTTTTTCTG
TAACACCAGCCATCCGTAGTCGTGTACAAATATTTGAGTTGGAACCACTCTCTAACGAGGATATTAAGGAAGCTATCCTA
GGTGTTTTAGAGGACAAGGAGCGTGGTTTTGACTTTGATGTCCAGTTAGATGATGATGCTCTAGATTTTATTGCTACGGC
TACTAATGGTGATTTACGTTCGGCTTATAATTCGTTGGATCTAGCTGTCATGTCGACGCCAGCTTCAGAAGATGGGCTTC
GCCATATTACTTTAGATACAGTGGAAAATAGTTTACAACGTAGCTATATCACCATGGATAAAGACGGTGATGGACACTAT
GATGTGCTCTCTGCTTTGCAAAAATCTATTCGAGGCTCTGATGTTAATGCCAGTCTTCATTATGCAGCGCGTTTGGTTGA
AGCAGGAGATCTCCCTAGTCTAGCGCGGCGCTTGACTGTGATTGCATACGAGGATATTGGTTTAGCTAATCCTGATGCGC
AAGTTCACACGGTTACAGCTTTGGAAGCTGCACAGAAAGTAGGTTTCCCAGAGGCGCGTATTTTGATAGCCAATGTAGTT
GTTGACTTAGCTTTATCTCCTAAGTCGAATTCTGCTTATATGGCTATGGATGCTGCCTTGGCAGACCTTAGAAAATCAGG
AAATTTACCGATTCCTCGTCATTTGAGAGATGGACACTATGCTGGAAGCAAGGAACTGGGTAATGCACAAGATTACAAGT
ATCCCCATGCTTATCCCGAAAAGTGGGTCAAGCAACAATACCTTCCAGATAAATTAAGAGGTGTGAATTATTTCCAACCC
AATGAAACCGGGAAATATGAAAGAGCTCTTGGAGCTAATAAAGACCGAATCGATAAGTTATCTAGATAA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(173-251)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-413)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

60.337

98.578

0.595