Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   I6I02_RS07025 Genome accession   NZ_CP066093
Coordinates   1557519..1558298 (-) Length   259 a.a.
NCBI ID   WP_232621247.1    Uniprot ID   -
Organism   Streptococcus salivarius strain FDAARGOS_1045     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1552519..1563298
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I02_RS07005 (I6I02_07005) - 1554219..1554914 (-) 696 WP_080610179.1 hypothetical protein -
  I6I02_RS07010 (I6I02_07010) - 1554925..1555272 (-) 348 WP_141760023.1 hypothetical protein -
  I6I02_RS07015 (I6I02_07015) - 1555384..1556934 (-) 1551 WP_198463322.1 PcfJ domain-containing protein -
  I6I02_RS07020 (I6I02_07020) - 1556993..1557499 (-) 507 WP_198463323.1 Cas9 inhibitor AcrIIA9 family protein -
  I6I02_RS07025 (I6I02_07025) comGA 1557519..1558298 (-) 780 WP_232621247.1 ATPase, T2SS/T4P/T4SS family Machinery gene
  I6I02_RS07030 (I6I02_07030) - 1558312..1559775 (-) 1464 WP_198463325.1 hypothetical protein -
  I6I02_RS07035 (I6I02_07035) - 1559913..1560506 (-) 594 WP_198463326.1 GTP pyrophosphokinase -
  I6I02_RS07040 (I6I02_07040) - 1560537..1561865 (-) 1329 WP_198463327.1 DUF3854 domain-containing protein -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29101.02 Da        Isoelectric Point: 4.4412

>NTDB_id=453787 I6I02_RS07025 WP_232621247.1 1557519..1558298(-) (comGA) [Streptococcus salivarius strain FDAARGOS_1045]
MIEIINNILNKAINNEAQDITFFPHGEDYEVAFRTADVKQVHDFISSEDADALFGHIKFMAEMDVTEKRCSQVRTCDYQL
DDGRVITIRISTIVNSQGLETMSIRLIHVNERRISLSEFDSSCMEELLEQVRIPGLHVITGPAGVGKTTLAYSLLAEAFK
EGEVITIERHVEIKEMSFYQLQVNKANGMELENLVTFVLRFNPDVLFIGEANTQEEVEAVLKAVSAGLSVVTTAYQDDFS
IPHDVLEIKQGKDGKRSID

Nucleotide


Download         Length: 780 bp        

>NTDB_id=453787 I6I02_RS07025 WP_232621247.1 1557519..1558298(-) (comGA) [Streptococcus salivarius strain FDAARGOS_1045]
ATGATTGAAATAATAAACAATATTTTGAACAAAGCTATTAATAACGAAGCTCAAGATATTACCTTCTTCCCACATGGTGA
AGATTACGAGGTGGCATTTAGAACTGCTGATGTTAAACAGGTCCATGACTTCATTTCATCAGAAGATGCGGATGCTCTAT
TTGGTCATATTAAATTTATGGCTGAGATGGACGTAACAGAAAAACGTTGTAGTCAGGTAAGAACTTGTGACTATCAGTTG
GACGATGGTAGAGTTATCACCATTCGGATATCGACGATAGTTAATTCTCAAGGACTAGAAACGATGTCTATCCGACTTAT
TCATGTGAATGAGCGACGAATTTCTTTGAGTGAGTTTGATAGTAGTTGTATGGAAGAACTGCTTGAACAAGTACGCATTC
CAGGCTTGCATGTCATTACTGGTCCTGCAGGTGTCGGCAAAACGACTTTAGCCTACTCGTTACTTGCTGAAGCTTTTAAA
GAAGGTGAAGTCATAACAATTGAAAGACATGTCGAGATTAAGGAAATGTCTTTTTACCAACTACAAGTCAATAAGGCTAA
CGGTATGGAACTGGAAAATCTCGTGACTTTTGTATTACGCTTCAACCCTGACGTCTTGTTTATCGGTGAAGCTAATACAC
AAGAAGAAGTAGAAGCAGTACTTAAGGCAGTTTCTGCAGGATTAAGTGTCGTTACAACAGCTTATCAAGATGACTTTTCA
ATCCCACATGATGTTTTAGAAATAAAACAAGGAAAAGATGGGAAACGTAGCATTGATTAA

Domains

Predicted by InterProScan.

Type II/IV secretion system protein (T2SSE)

(7-235)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Streptococcus gordonii str. Challis substr. CH1

38.683

93.822

0.363