Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   I6I02_RS01265 Genome accession   NZ_CP066093
Coordinates   255297..256082 (+) Length   261 a.a.
NCBI ID   WP_002884784.1    Uniprot ID   -
Organism   Streptococcus salivarius strain FDAARGOS_1045     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 250297..261082
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I02_RS01240 (I6I02_01240) - 250382..251134 (+) 753 WP_002891688.1 hypothetical protein -
  I6I02_RS01245 (I6I02_01245) - 251296..252261 (-) 966 WP_002890057.1 IS3 family transposase -
  I6I02_RS01250 (I6I02_01250) - 252258..252935 (-) 678 WP_002890056.1 helix-turn-helix domain-containing protein -
  I6I02_RS01255 (I6I02_01255) - 253010..253462 (-) 453 WP_002891687.1 universal stress protein -
  I6I02_RS01260 (I6I02_01260) - 253824..255038 (+) 1215 WP_139723736.1 pyridoxal phosphate-dependent aminotransferase -
  I6I02_RS01265 (I6I02_01265) codY 255297..256082 (+) 786 WP_002884784.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  I6I02_RS01270 (I6I02_01270) - 256148..256699 (+) 552 WP_155213412.1 cysteine hydrolase family protein -
  I6I02_RS01275 (I6I02_01275) - 256821..257669 (+) 849 WP_139723737.1 MetQ/NlpA family ABC transporter substrate-binding protein -
  I6I02_RS01280 (I6I02_01280) msrA 257681..258190 (+) 510 WP_139723738.1 peptide-methionine (S)-S-oxide reductase MsrA -
  I6I02_RS01285 (I6I02_01285) - 258343..259782 (+) 1440 WP_155213411.1 6-phospho-beta-glucosidase -

Sequence

Protein


Download         Length: 261 a.a.        Molecular weight: 28829.85 Da        Isoelectric Point: 4.3715

>NTDB_id=453735 I6I02_RS01265 WP_002884784.1 255297..256082(+) (codY) [Streptococcus salivarius strain FDAARGOS_1045]
MANLLAKTRKITSILQRSVDSLEGDLPYNNMAAQLADIIDCNAAIVNGGGALLGFAMKYKTNNDRVEEFFEAKQLPEEYT
RGISRVYDTQENIGIDSDLTIFPVESKDDFPDGLTTIAPIYGGGMRLGSFIIWRNDHDFVDEDLILVEIASTVVGLQLLN
LQTENLEETIRKQTAINMAINTLSYSEIKAVSAILNELDGLEGRLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVLNEGIYDKLKEYE

Nucleotide


Download         Length: 786 bp        

>NTDB_id=453735 I6I02_RS01265 WP_002884784.1 255297..256082(+) (codY) [Streptococcus salivarius strain FDAARGOS_1045]
ATGGCAAATTTGCTGGCTAAAACACGTAAAATTACATCTATCTTGCAACGCTCAGTAGACAGCTTGGAAGGAGATCTTCC
ATACAACAACATGGCTGCTCAATTGGCGGATATCATTGATTGTAACGCTGCTATCGTTAATGGTGGTGGTGCTCTCCTTG
GTTTTGCCATGAAGTACAAAACCAACAATGATCGTGTGGAAGAGTTTTTTGAAGCTAAACAACTTCCAGAAGAATACACA
CGTGGTATCAGCCGTGTTTATGATACTCAAGAAAACATTGGTATTGACAGTGACTTGACCATTTTCCCAGTGGAGTCAAA
AGATGACTTCCCAGATGGTTTGACTACAATTGCTCCTATCTATGGTGGTGGTATGCGTCTTGGTTCTTTCATCATTTGGC
GTAACGATCATGATTTTGTGGATGAAGATCTTATCTTGGTTGAGATAGCCTCTACGGTAGTTGGGTTGCAGTTGTTGAAC
CTTCAAACAGAGAACTTGGAAGAAACGATTCGTAAACAAACGGCTATTAACATGGCTATTAATACCTTGTCTTACTCAGA
AATCAAGGCAGTTTCAGCTATCTTGAACGAGTTGGACGGTTTGGAAGGTCGCTTGACAGCATCTGTTATCGCTGACCGTA
TCGGAATTACGCGTTCAGTTATCGTTAATGCCCTTCGTAAGTTGGAATCAGCTGGTATTATTGAGAGCCGTTCACTCGGT
ATGAAAGGGACTTATCTTAAAGTCCTTAACGAAGGTATCTACGACAAATTGAAAGAATACGAATAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(3-182)

CodY helix-turn-helix domain (HTH_CodY)

(201-261)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

64.981

98.467

0.64
  codY Bacillus subtilis subsp. subtilis str. 168

53.036

94.636

0.502