NTDB

Overview

Name	ssbA	Type	Machinery gene
Locus tag	HSZ50_RS12555	Genome accession	NZ_CP054575
Coordinates	2523104..2523616 (-)	Length	170 a.a.
NCBI ID	WP_002484307.1	Uniprot ID	-
Organism	Staphylococcus saprophyticus strain UTI-050
Function	ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 2518104..2528616

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HSZ50_RS12505 (HSZ50_12520)	-	2518399..2519013 (-)	615	WP_011303954.1	FMN-binding negative transcriptional regulator	-
HSZ50_RS12510 (HSZ50_12525)	-	2519055..2519390 (-)	336	WP_011303955.1	hypothetical protein	-
HSZ50_RS12515 (HSZ50_12530)	-	2519494..2519838 (-)	345	WP_011303956.1	DUF4260 domain-containing protein	-
HSZ50_RS12520 (HSZ50_12535)	-	2520043..2520378 (+)	336	WP_156676072.1	DUF4870 domain-containing protein	-
HSZ50_RS12525 (HSZ50_12540)	-	2520433..2520846 (+)	414	WP_011303958.1	YxeA family protein	-
HSZ50_RS12530 (HSZ50_12545)	-	2520990..2521262 (-)	273	WP_011303959.1	hypothetical protein	-
HSZ50_RS13635	-	2521686..2521808 (+)	123	WP_011303961.1	hypothetical protein	-
HSZ50_RS12535 (HSZ50_12550)	-	2522082..2522288 (+)	207	WP_011303963.1	hypothetical protein	-
HSZ50_RS12540 (HSZ50_12555)	-	2522313..2522534 (+)	222	WP_011303964.1	hypothetical protein	-
HSZ50_RS12545 (HSZ50_12560)	-	2522549..2522689 (+)	141	WP_162835602.1	hypothetical protein	-
HSZ50_RS12550 (HSZ50_12565)	rpsR	2522812..2523054 (-)	243	WP_002484306.1	30S ribosomal protein S18	-
HSZ50_RS12555 (HSZ50_12570)	ssbA	2523104..2523616 (-)	513	WP_002484307.1	single-stranded DNA-binding protein	Machinery gene
HSZ50_RS12560 (HSZ50_12575)	rpsF	2523635..2523940 (-)	306	WP_011303966.1	30S ribosomal protein S6	-
HSZ50_RS12565 (HSZ50_12580)	-	2524362..2525168 (+)	807	WP_047505216.1	GH25 family lysozyme	-
HSZ50_RS12570 (HSZ50_12585)	ychF	2525331..2526428 (-)	1098	WP_047505213.1	redox-regulated ATPase YchF	-
HSZ50_RS12575 (HSZ50_12590)	-	2526428..2526643 (-)	216	WP_002484311.1	DUF951 domain-containing protein	-
HSZ50_RS12580 (HSZ50_12595)	-	2526672..2527550 (-)	879	WP_011303969.1	mechanosensitive ion channel family protein	-

Sequence

Protein

Download Length: 170 a.a. Molecular weight: 18948.48 Da Isoelectric Point: 4.9163

                                >NTDB_id=453619 HSZ50_RS12555 WP_002484307.1 2523104..2523616(-) (ssbA) [Staphylococcus saprophyticus strain UTI-050]

MINRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRKQAENVNNYLFKGSLAGVDGRIQSR

SYENQEGRRIFVTEVVCDSVQFLEPKNQNQRHGQEGNNNNFQNFGGQQSGQNTSSYQSNNNNNSSNNNQSDNPFANANGP

IDISDDDLPF

Nucleotide

Download Length: 513 bp

                                >NTDB_id=453619 HSZ50_RS12555 WP_002484307.1 2523104..2523616(-) (ssbA) [Staphylococcus saprophyticus strain UTI-050]

ATGATAAATAGAGTTGTTTTAGTCGGTCGTTTAACTAAAGATCCAGAATATAGAACAACACCCTCAGGCGTGAGTGTTGC

GACTTTTACTCTAGCAGTAAATCGTACGTTTACAAATGCGCAAGGGGAACGCGAAGCGGATTTCATTAACTGTGTCGTTT

TTAGAAAACAAGCAGAGAATGTTAACAACTACTTATTTAAAGGTAGTTTAGCTGGCGTTGACGGTCGCATTCAATCACGT

AGCTATGAAAACCAAGAAGGTCGTCGTATATTTGTGACTGAAGTGGTTTGTGATAGTGTTCAATTCCTTGAACCTAAAAA

TCAAAACCAACGTCATGGTCAAGAAGGAAATAACAATAATTTCCAAAACTTTGGCGGACAACAATCAGGACAAAATACGT

CATCTTATCAAAGTAATAACAACAATAACTCATCAAACAATAATCAATCTGATAACCCATTTGCAAATGCAAACGGACCA

ATTGATATTAGTGATGATGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
ssbA	Bacillus subtilis subsp. subtilis str. 168	63.953	100	0.647
ssb	Latilactobacillus sakei subsp. sakei 23K	57.225	100	0.582
ssbB	Bacillus subtilis subsp. subtilis str. 168	59.091	64.706	0.382

Detailed information NTG0453619