Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   I6H78_RS02785 Genome accession   NZ_CP066059
Coordinates   572386..573174 (-) Length   262 a.a.
NCBI ID   WP_000940725.1    Uniprot ID   A0ABU5G4H7
Organism   Streptococcus oralis strain FDAARGOS_1021     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 567386..578174
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H78_RS02760 (I6H78_02760) vex2 568578..569225 (-) 648 WP_198459885.1 ABC transporter ATP-binding subunit Vex2 -
  I6H78_RS02765 (I6H78_02765) - 569352..570629 (-) 1278 WP_198459887.1 ABC transporter permease -
  I6H78_RS02770 (I6H78_02770) - 570762..571373 (-) 612 WP_198459889.1 CPBP family intramembrane glutamic endopeptidase -
  I6H78_RS02780 (I6H78_02780) - 571811..572386 (-) 576 WP_198459891.1 cysteine hydrolase family protein -
  I6H78_RS02785 (I6H78_02785) codY 572386..573174 (-) 789 WP_000940725.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  I6H78_RS02790 (I6H78_02790) - 573458..575035 (-) 1578 WP_198459893.1 DEAD/DEAH box helicase -
  I6H78_RS02795 (I6H78_02795) - 575384..576700 (+) 1317 WP_198459895.1 FAD-containing oxidoreductase -
  I6H78_RS02800 (I6H78_02800) - 577304..578059 (+) 756 WP_198459897.1 hypothetical protein -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29683.04 Da        Isoelectric Point: 5.2488

>NTDB_id=453416 I6H78_RS02785 WP_000940725.1 572386..573174(-) (codY) [Streptococcus oralis strain FDAARGOS_1021]
MAHLLEKTRKITSILKRSEEQLQDELPYNAITRQLADIIDCNACIVNNKGRLLGYFMRYKTNNDRVEQFFQTKTFPEVYV
QGANMIYDTEANLPVEHDLTIFPVESRADFPDGLTTIAPIHVSGIRLGSLIIWRNDKKFEDEDLILVEIASTVVGIQLLN
FQREEDEKNIRRRTAVTMAVNTLSYSELRAVSAILAELDGNEGQLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVLIGDIFEEVKKRDY

Nucleotide


Download         Length: 789 bp        

>NTDB_id=453416 I6H78_RS02785 WP_000940725.1 572386..573174(-) (codY) [Streptococcus oralis strain FDAARGOS_1021]
ATGGCACATTTATTAGAAAAAACAAGAAAAATAACGTCTATTCTAAAGCGCTCTGAGGAGCAACTCCAAGATGAACTTCC
TTACAATGCGATCACACGCCAGTTAGCAGATATTATTGATTGTAACGCTTGTATTGTGAATAACAAGGGCCGTCTCTTGG
GCTACTTTATGCGTTATAAGACCAATAATGACCGTGTAGAACAATTCTTTCAAACCAAAACCTTCCCTGAGGTCTATGTA
CAAGGCGCAAACATGATCTATGATACGGAAGCCAACCTTCCTGTTGAACATGATTTGACCATTTTCCCTGTGGAGAGCCG
TGCGGACTTTCCAGATGGGTTGACAACTATTGCTCCGATTCATGTATCAGGGATTCGCCTAGGTTCGTTGATTATTTGGC
GCAATGATAAGAAGTTTGAAGATGAAGATTTGATCCTTGTCGAGATTGCGAGCACGGTTGTGGGAATTCAACTATTGAAC
TTCCAACGTGAAGAAGATGAAAAGAATATTCGCCGTCGTACGGCTGTTACCATGGCGGTCAACACCCTTTCCTATTCAGA
ACTTCGTGCCGTATCAGCTATTTTAGCTGAATTGGATGGAAATGAAGGTCAGCTGACTGCGTCTGTTATTGCAGACCGTA
TTGGCATTACACGCTCAGTGATTGTCAATGCGCTTCGTAAACTGGAGTCAGCGGGAATTATTGAGAGTCGTTCACTTGGA
ATGAAGGGGACTTATCTCAAAGTTCTAATTGGTGATATTTTTGAGGAAGTGAAAAAGAGGGACTACTAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(3-182)

CodY helix-turn-helix domain (HTH_CodY)

(202-258)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

63.359

100

0.634
  codY Bacillus subtilis subsp. subtilis str. 168

50.407

93.893

0.473