Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpE   Type   Regulator
Locus tag   I6H72_RS09210 Genome accession   NZ_CP066055
Coordinates   1811669..1813504 (+) Length   611 a.a.
NCBI ID   WP_198457898.1    Uniprot ID   -
Organism   Streptococcus constellatus strain FDAARGOS_1015     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1806669..1818504
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H72_RS09205 (I6H72_09205) - 1809918..1811672 (+) 1755 WP_198457896.1 type IA DNA topoisomerase -
  I6H72_RS09210 (I6H72_09210) clpE 1811669..1813504 (+) 1836 WP_198457898.1 AAA family ATPase Regulator
  I6H72_RS09215 (I6H72_09215) - 1813593..1813940 (+) 348 WP_025271726.1 TrbC/VirB2 family protein -
  I6H72_RS09220 (I6H72_09220) - 1813954..1815012 (+) 1059 WP_025271727.1 hypothetical protein -
  I6H72_RS09225 (I6H72_09225) - 1815031..1815783 (+) 753 WP_025271728.1 hypothetical protein -

Sequence

Protein


Download         Length: 611 a.a.        Molecular weight: 69031.01 Da        Isoelectric Point: 5.1356

>NTDB_id=453383 I6H72_RS09210 WP_198457898.1 1811669..1813504(+) (clpE) [Streptococcus constellatus strain FDAARGOS_1015]
MNQASKTPFLDQFTENLSQKISQKPKDYQVYGREEEIQAVIISLCRRTKNNPILIGEPGVGKTAILEGLALEILQDRVPE
TLKGLTVRSLELSSLMNESEGSFITKLKNIIDELKKTPGQNLLFIDEFHTVVGAGSQNGESLDAGNILKPSLSRGEIQLI
GATTLDEFHEYIEQDRALERRTQPILIKEPTIAQAIEIVGQAKEIYEDYHNVSISHEAVCQAVKLSTRYIPDRFLPDKAF
DLIDEAATIVSSKGQELVTEREIAEVLKKQTGIPVTTVLKGNKERLDSLEEKLHQRVKGQDEAIKAVVEVIKISQAGMQD
ENKPIGSLLFLGTTGVGKTELSKALAEGLFDDEEALIRFDMSEYSQKGDVTKLIGDRNRRSKGLLTEGVKRKPYSVILLD
EIEKAHPDIYDLLLQVIDDGRLTDATGRLVSFKNTIVIMTTNIGQEKLLTKAAMKGSLRHLTEREQIQFEASMEIELKTE
FRPEFLNRIEYKVIFNLLEREDLEEIVEKNMKEIEERTNKKGLFLSYDPAVLDYLVDIGTDSKNGARPLERLLKRKIQAP
ISDIILKLPNIKAHQYVVHIQVEGEKEESNPRKDPRQLQFNVLNQSNYLFN

Nucleotide


Download         Length: 1836 bp        

>NTDB_id=453383 I6H72_RS09210 WP_198457898.1 1811669..1813504(+) (clpE) [Streptococcus constellatus strain FDAARGOS_1015]
TTGAATCAAGCATCAAAGACTCCTTTTTTAGACCAATTCACAGAAAATTTATCTCAAAAAATTAGTCAAAAGCCAAAGGA
TTATCAAGTGTACGGAAGAGAGGAAGAAATTCAAGCTGTTATTATCTCTCTTTGCAGACGAACGAAGAATAATCCTATTT
TGATTGGTGAACCTGGAGTTGGGAAAACAGCAATTTTAGAAGGATTAGCTTTGGAAATCTTACAAGATCGTGTTCCCGAA
ACATTAAAAGGCTTAACTGTCCGTTCCCTTGAATTGTCTAGTTTAATGAATGAGAGCGAAGGAAGTTTTATCACAAAACT
GAAAAACATCATTGATGAATTAAAGAAAACTCCTGGTCAAAATCTACTCTTTATTGATGAATTTCATACAGTGGTCGGTG
CTGGGAGTCAGAATGGAGAATCACTAGATGCAGGAAATATTTTGAAACCTTCTTTGTCTCGTGGAGAGATTCAGTTGATT
GGTGCTACTACATTAGATGAATTTCATGAGTATATTGAACAAGATCGTGCTTTGGAACGCAGAACCCAACCAATTCTCAT
TAAAGAGCCAACTATTGCACAAGCGATTGAAATTGTGGGGCAAGCAAAAGAAATTTATGAAGACTATCATAATGTTTCAA
TCAGTCATGAAGCTGTTTGTCAAGCCGTGAAACTATCTACCCGTTATATTCCTGATCGCTTTCTTCCTGATAAAGCTTTT
GATTTGATTGATGAGGCTGCTACTATAGTTTCTTCAAAGGGACAAGAACTTGTTACAGAACGGGAAATAGCAGAAGTGCT
GAAGAAGCAAACTGGTATTCCAGTAACTACTGTTTTAAAGGGAAACAAAGAACGCTTAGATTCTTTAGAAGAAAAGCTTC
ATCAGCGAGTAAAAGGACAAGATGAAGCTATCAAAGCTGTTGTAGAAGTGATTAAAATTAGTCAAGCTGGAATGCAAGAC
GAAAACAAGCCAATTGGTTCCCTTCTTTTCTTAGGAACAACTGGAGTTGGAAAAACAGAATTGTCAAAAGCTCTGGCTGA
AGGATTATTTGATGATGAAGAAGCGTTGATTCGATTTGATATGTCAGAATACTCTCAAAAAGGTGATGTCACTAAATTGA
TTGGAGATAGAAATCGTAGAAGCAAGGGACTTTTAACAGAAGGAGTCAAAAGAAAACCTTATTCCGTTATTTTGCTCGAT
GAAATAGAAAAAGCTCATCCAGACATCTATGACCTTCTTCTTCAGGTGATTGATGATGGTCGATTAACAGATGCGACCGG
AAGATTAGTCAGTTTCAAAAATACTATTGTGATTATGACAACGAATATTGGTCAAGAAAAGCTTTTGACAAAAGCTGCTA
TGAAAGGCAGTCTTCGTCATTTAACAGAACGGGAACAAATTCAATTTGAAGCTAGCATGGAGATTGAACTTAAAACAGAA
TTTCGTCCTGAATTTTTAAATCGGATTGAATACAAAGTGATTTTCAATTTACTCGAAAGAGAAGATTTAGAAGAAATCGT
GGAGAAAAATATGAAAGAAATCGAGGAGCGAACGAATAAAAAGGGATTGTTCTTATCTTATGACCCAGCTGTTCTGGATT
ATTTAGTAGATATCGGAACAGATTCTAAAAATGGTGCTCGTCCACTTGAACGATTATTGAAAAGAAAAATTCAAGCTCCT
ATTTCAGATATTATTTTAAAACTTCCGAATATAAAAGCCCATCAGTACGTTGTTCATATTCAAGTAGAAGGAGAAAAAGA
AGAAAGTAATCCCCGAAAAGACCCTCGTCAATTGCAATTTAATGTTTTAAATCAGTCAAACTATTTATTCAACTGA

Domains

Predicted by InterProScan.

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(498-567)

ATPase family associated with various cellular activities (AAA) (AAA)

(53-166)

AAA domain (Cdc48 subfamily) (AAA_2)

(323-490)

AAA lid domain (AAA_lid_9)

(192-260)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpE Streptococcus pneumoniae Rx1

39.875

100

0.419
  clpE Streptococcus pneumoniae TIGR4

39.875

100

0.419
  clpE Streptococcus pneumoniae R6

39.875

100

0.419
  clpE Streptococcus pneumoniae D39

39.875

100

0.419
  clpE Streptococcus mutans UA159

40.605

100

0.417
  clpC Streptococcus thermophilus LMD-9

41.818

99.018

0.414
  clpC Streptococcus thermophilus LMG 18311

41.653

99.018

0.412
  clpC Lactococcus lactis subsp. cremoris KW2

39.873

100

0.412
  clpC Streptococcus pneumoniae TIGR4

40.864

98.527

0.403
  clpC Streptococcus pneumoniae Rx1

40.864

98.527

0.403
  clpC Streptococcus pneumoniae D39

40.864

98.527

0.403
  clpC Streptococcus mutans UA159

40.394

99.673

0.403
  clpC Lactococcus lactis subsp. lactis strain DGCC12653

38.208

100

0.398