Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   I6H72_RS07810 Genome accession   NZ_CP066055
Coordinates   1535570..1536841 (-) Length   423 a.a.
NCBI ID   WP_198457796.1    Uniprot ID   -
Organism   Streptococcus constellatus strain FDAARGOS_1015     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1530570..1541841
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H72_RS07775 (I6H72_07775) - 1530677..1530979 (+) 303 WP_106079139.1 hypothetical protein -
  I6H72_RS07780 (I6H72_07780) - 1531027..1531485 (+) 459 WP_106079140.1 RNA-binding protein -
  I6H72_RS07785 (I6H72_07785) - 1531500..1532222 (+) 723 WP_106079141.1 cell division protein FtsK -
  I6H72_RS07790 (I6H72_07790) - 1532345..1533577 (+) 1233 WP_106079142.1 replication initiation factor domain-containing protein -
  I6H72_RS07795 (I6H72_07795) - 1533651..1533989 (+) 339 WP_106079143.1 DUF771 domain-containing protein -
  I6H72_RS07800 (I6H72_07800) - 1534038..1535174 (+) 1137 WP_198457795.1 site-specific integrase -
  I6H72_RS07810 (I6H72_07810) rarA 1535570..1536841 (-) 1272 WP_198457796.1 replication-associated recombination protein A Machinery gene
  I6H72_RS07815 (I6H72_07815) - 1536943..1537413 (+) 471 WP_198457797.1 DUF3013 family protein -
  I6H72_RS07820 (I6H72_07820) - 1537463..1537909 (+) 447 WP_198457798.1 NUDIX hydrolase -
  I6H72_RS07825 (I6H72_07825) - 1537906..1538376 (+) 471 WP_006268202.1 GNAT family N-acetyltransferase -
  I6H72_RS07830 (I6H72_07830) prmA 1538392..1539345 (+) 954 WP_006267983.1 50S ribosomal protein L11 methyltransferase -
  I6H72_RS07835 (I6H72_07835) - 1539346..1540086 (+) 741 WP_020998051.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  I6H72_RS07840 (I6H72_07840) - 1540253..1540399 (+) 147 WP_006268140.1 hypothetical protein -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 46789.19 Da        Isoelectric Point: 6.3529

>NTDB_id=453366 I6H72_RS07810 WP_198457796.1 1535570..1536841(-) (rarA) [Streptococcus constellatus strain FDAARGOS_1015]
MPDNLAIRMRPKNINQVIGQKHLVGEGKIIRRMVEANRLSSMILYGPPGIGKTSIASAIAGTTKFAFRTFNATVDSKKRL
QEIAEEAKFSGGLVMLLDEIHRLDKTKQDFLLPLLENGLVIMIGATTENPFFSVTPAIRSRVQIFELEPLTNDDIKQAIQ
TALTDTERGFDFPVQLDDDALDFIATSTNGDLRSAFNSLDLAVLSTQADTTGVRHITLDIMENSLQKSYITMDKDGDGHY
DVLSALQKSIRGSDVNASLHYAARLIEAGDLPSLARRLTVIAYEDIGLANPDAQIHTVTALEAAQKIGFPEARILIANIV
IDLALSPKSNSAYVAIDKALSDLRQNGNLAIPRHLRDGHYAGSKELGNAQDYKYPHNYPGNWVQQDYLPEKIKNADYFTP
NENGKYERALGMTKNKIEQLKNH

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=453366 I6H72_RS07810 WP_198457796.1 1535570..1536841(-) (rarA) [Streptococcus constellatus strain FDAARGOS_1015]
ATGCCAGACAATTTAGCGATTCGCATGCGGCCTAAAAATATCAATCAGGTCATCGGTCAGAAACATCTGGTCGGTGAAGG
AAAAATCATTCGTCGCATGGTGGAAGCCAATCGCCTGTCTTCCATGATTCTCTATGGTCCGCCAGGGATTGGCAAGACTT
CAATTGCTTCGGCTATTGCCGGAACTACCAAATTTGCTTTTCGGACCTTTAATGCTACTGTTGATAGTAAGAAGCGTCTG
CAAGAGATTGCGGAAGAAGCCAAATTCTCTGGTGGTTTGGTGATGCTGTTAGACGAGATTCATCGCTTGGACAAGACCAA
ACAGGACTTCCTCCTACCGCTATTAGAAAACGGTCTGGTCATCATGATTGGCGCCACAACAGAAAATCCCTTTTTCTCCG
TCACTCCCGCTATTCGCAGCCGAGTACAGATTTTCGAGCTGGAGCCTCTGACAAATGATGATATTAAACAAGCCATTCAA
ACAGCCCTGACGGACACCGAACGAGGTTTTGATTTTCCTGTCCAGCTAGATGATGACGCTCTGGATTTCATTGCCACTTC
CACGAACGGAGACTTGCGCTCAGCCTTTAATTCTCTAGATTTAGCAGTTCTCTCTACTCAAGCAGATACTACAGGCGTTC
GCCATATCACTCTGGATATTATGGAAAACAGCCTGCAAAAGAGCTACATCACTATGGACAAAGACGGAGACGGTCACTAT
GACGTCCTGTCCGCTTTACAGAAGTCTATTCGAGGGTCTGATGTCAATGCCAGTCTCCATTATGCAGCTCGCTTGATTGA
AGCTGGAGACCTTCCCAGCCTCGCACGACGCCTGACGGTCATTGCTTATGAAGACATTGGTTTGGCAAATCCCGATGCTC
AGATTCATACAGTGACCGCACTTGAAGCCGCTCAAAAAATTGGGTTCCCAGAAGCTCGCATCCTCATTGCCAACATTGTC
ATTGACCTAGCACTTTCTCCTAAGTCCAACTCGGCCTACGTAGCCATAGACAAAGCACTCTCTGACTTGCGCCAGAACGG
AAATCTCGCTATCCCTCGCCATCTACGAGATGGTCACTACGCTGGCAGTAAGGAGCTGGGAAATGCGCAGGATTACAAAT
ATCCACATAACTATCCTGGTAATTGGGTGCAGCAAGACTACCTTCCTGAAAAAATTAAAAATGCCGATTATTTCACTCCG
AACGAAAACGGGAAGTACGAACGAGCCCTTGGCATGACTAAAAATAAGATTGAACAACTCAAAAACCACTAA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(173-251)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

59.809

98.818

0.591