Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   HUF97_RS08085 Genome accession   NZ_CP054562
Coordinates   1615203..1615982 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain YB-130     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1610203..1620982
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUF97_RS08065 trmFO 1610890..1612197 (+) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  HUF97_RS08070 xerC 1612267..1613184 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  HUF97_RS08075 hslV 1613200..1613745 (+) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  HUF97_RS08080 hslU 1613762..1615165 (+) 1404 WP_007611413.1 HslU--HslV peptidase ATPase subunit -
  HUF97_RS08085 codY 1615203..1615982 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  HUF97_RS08090 flgB 1616336..1616725 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  HUF97_RS08095 flgC 1616725..1617177 (+) 453 WP_007409776.1 flagellar basal body rod protein FlgC -
  HUF97_RS08100 fliE 1617188..1617508 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  HUF97_RS08105 fliF 1617551..1619161 (+) 1611 WP_032874889.1 flagellar basal-body MS-ring/collar protein FliF -
  HUF97_RS08110 fliG 1619174..1620190 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  HUF97_RS08115 fliH 1620183..1620938 (+) 756 WP_032874891.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=453360 HUF97_RS08085 WP_003154263.1 1615203..1615982(+) (codY) [Bacillus velezensis strain YB-130]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=453360 HUF97_RS08085 WP_003154263.1 1615203..1615982(+) (codY) [Bacillus velezensis strain YB-130]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTAGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471