Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   I6H72_RS05155 Genome accession   NZ_CP066055
Coordinates   1043459..1045813 (+) Length   784 a.a.
NCBI ID   WP_198457636.1    Uniprot ID   -
Organism   Streptococcus constellatus strain FDAARGOS_1015     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1038459..1050813
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H72_RS05135 (I6H72_05135) - 1040786..1041334 (-) 549 WP_198457635.1 CvpA family protein -
  I6H72_RS05140 (I6H72_05140) - 1041331..1041636 (-) 306 WP_003070932.1 hypothetical protein -
  I6H72_RS05145 (I6H72_05145) rnhC 1041722..1042612 (+) 891 WP_039677444.1 ribonuclease HIII -
  I6H72_RS05150 (I6H72_05150) lepB 1042616..1043230 (+) 615 WP_006269005.1 signal peptidase I -
  I6H72_RS05155 (I6H72_05155) recD/recD2/recDB 1043459..1045813 (+) 2355 WP_198457636.1 ATP-dependent RecD-like DNA helicase Machinery gene
  I6H72_RS05160 (I6H72_05160) dinB 1046095..1047162 (-) 1068 WP_150225794.1 DNA polymerase IV -
  I6H72_RS05165 (I6H72_05165) - 1047181..1047840 (-) 660 WP_020997582.1 hypothetical protein -
  I6H72_RS05170 (I6H72_05170) pflB 1048069..1050384 (+) 2316 WP_006269110.1 formate C-acetyltransferase -

Sequence

Protein


Download         Length: 784 a.a.        Molecular weight: 88600.60 Da        Isoelectric Point: 4.6376

>NTDB_id=453331 I6H72_RS05155 WP_198457636.1 1043459..1045813(+) (recD/recD2/recDB) [Streptococcus constellatus strain FDAARGOS_1015]
MEFYFSGTIERIIFENPSSFFRILLLDIDDTDADFDNFEIIVTGTMADIMEGEDYTFWGNLVQHPKYGEQLKITRYERAK
PTSKGLVKYFSSDHFKGIGVKTAQKIVDLYGDNTIDKVLAEPEKLKDIAGLSAKNREAFIMKLRQNYGTERVLAKLSEYG
ISNKLAFQIHDFYKEETLEIVEHYPYQLVEDIQGIGFKIADQLAQSLGIESTAPERFRAGLLHTLLTQSMEKGDTYLEAK
ELLEHTIELLESSRQIELDPSSVADELAHLIEEDKVQNVDTKIFENSLFFAEEGICNNLLRILEKENQNKYEPEKIEAAL
THIEEEFAISYDAIQKQAICNAIQHKIFILTGGPGTGKTTVINGIIAVYALLHGLDLHKSQDLPILLAAPTGRAARRMNE
LTGLPSATIHRHLGMTGDDDTSHLDDYLDTDFIIVDEFSMVDTWLANQLLSNISSNSKLLIVGDADQLPSVSPGQVLADL
LKIPLLPQTKLEKIYRQSKDSTIVTLASQIQKGILPPDFIEKKADRSYFEARSEHIPQMIERIVEAAIRSGIPDQDVQVL
APMYRGQAGIDHINQLMQNLINPAETEQIIFEATDCQYRQGDKVIHLVNDAESNVFNGDLGYITDLLPAKYTDSKQDELT
INFDGNEIVYQRSEWYKIRLAYAMSIHKSQGSEFPVVILPITSSSHRMLQRNLIYTAITRAKSKLILLGEKSAFAFAVQN
TGTTRKTYLKERFEDFLNVEKVIHTSVDNLETTVGNYVLTEENFLKINPMIGITDEDIQNIFGE

Nucleotide


Download         Length: 2355 bp        

>NTDB_id=453331 I6H72_RS05155 WP_198457636.1 1043459..1045813(+) (recD/recD2/recDB) [Streptococcus constellatus strain FDAARGOS_1015]
ATGGAATTTTACTTTTCAGGCACCATTGAACGCATTATTTTTGAAAATCCCAGCAGTTTCTTTCGGATTCTGCTGTTAGA
TATTGACGACACCGATGCCGATTTTGATAATTTTGAGATTATTGTCACAGGCACCATGGCGGATATTATGGAGGGCGAAG
ACTACACTTTTTGGGGAAATCTCGTGCAACACCCTAAATATGGAGAACAGCTTAAAATAACACGCTATGAGCGTGCAAAG
CCAACCAGCAAAGGCTTAGTCAAATATTTTTCAAGCGACCATTTTAAAGGGATTGGTGTAAAAACAGCACAAAAAATCGT
GGACCTCTATGGCGATAACACGATTGATAAGGTCTTAGCAGAGCCAGAAAAATTAAAGGATATTGCAGGGCTTTCTGCCA
AAAATCGCGAAGCTTTTATTATGAAACTAAGACAGAACTACGGTACCGAGCGAGTCCTTGCAAAGCTATCTGAATACGGC
ATTTCAAATAAGCTTGCCTTTCAGATTCACGATTTTTACAAAGAAGAGACTCTCGAAATTGTCGAACACTATCCTTACCA
ATTGGTAGAAGATATTCAAGGAATAGGATTTAAAATTGCCGACCAACTGGCACAAAGCTTAGGAATTGAAAGTACTGCTC
CAGAGCGTTTTCGTGCTGGGCTGCTTCACACACTCCTAACCCAGTCTATGGAAAAGGGTGACACTTATCTTGAAGCCAAA
GAACTTCTGGAACATACGATTGAACTCCTCGAAAGTTCCCGTCAGATTGAGTTAGACCCAAGTTCTGTTGCGGATGAGCT
GGCACATTTGATTGAAGAAGATAAAGTTCAAAATGTCGATACGAAGATTTTTGAAAACAGTCTCTTTTTTGCTGAAGAGG
GAATCTGCAACAATCTCTTACGCATTCTGGAGAAGGAAAATCAAAATAAATATGAACCGGAAAAAATCGAAGCTGCTCTT
ACTCACATTGAGGAAGAATTTGCTATTTCCTATGATGCTATCCAGAAACAAGCCATTTGCAATGCTATCCAGCACAAAAT
TTTCATCTTAACAGGTGGTCCTGGAACTGGAAAAACGACCGTTATCAATGGAATTATTGCTGTCTACGCTCTGCTACATG
GTCTGGATTTACACAAATCTCAAGATTTACCTATCCTTTTAGCAGCTCCGACTGGGCGTGCTGCCAGACGCATGAATGAA
TTAACAGGGCTTCCAAGCGCAACGATTCATCGGCATTTAGGCATGACAGGAGACGATGACACTAGCCATTTAGATGATTA
TTTGGACACAGACTTTATTATTGTCGACGAATTTTCAATGGTAGATACTTGGTTAGCCAATCAACTCCTCAGCAATATCT
CTTCCAACAGCAAACTTCTCATTGTCGGAGATGCTGATCAGCTGCCTTCTGTCAGCCCCGGACAAGTGCTGGCAGATTTA
CTGAAAATCCCTCTTCTTCCGCAGACCAAATTAGAAAAAATTTATCGACAAAGCAAAGACTCCACTATCGTCACCTTAGC
CAGTCAGATTCAAAAAGGCATTCTGCCACCTGATTTTATAGAAAAAAAGGCTGACCGTTCTTATTTTGAAGCGCGTAGTG
AACATATTCCGCAGATGATTGAACGTATTGTAGAAGCTGCTATCCGCAGTGGCATTCCAGATCAAGATGTGCAGGTGCTT
GCGCCTATGTACCGCGGACAGGCTGGGATTGACCACATCAATCAACTCATGCAAAATCTAATCAACCCTGCCGAAACAGA
ACAAATCATTTTTGAAGCAACTGATTGTCAATATCGACAAGGCGACAAGGTCATTCATCTGGTCAATGATGCGGAAAGCA
ATGTGTTTAATGGTGATTTAGGCTATATCACCGATTTGCTACCAGCAAAATATACGGACTCTAAGCAGGACGAACTGACT
ATCAATTTCGACGGCAATGAGATTGTTTATCAACGCAGTGAATGGTACAAGATTCGTCTGGCATACGCTATGAGTATCCA
CAAATCTCAGGGCAGTGAATTTCCAGTCGTCATTTTACCGATTACGTCCAGCAGCCACCGCATGCTGCAACGCAATCTTA
TCTATACTGCTATCACCCGCGCCAAGAGCAAATTGATTCTTCTTGGGGAAAAGTCTGCCTTTGCTTTTGCTGTCCAAAAT
ACTGGGACAACACGTAAAACCTACCTGAAAGAGCGCTTTGAAGACTTTCTCAATGTAGAAAAAGTTATACACACTTCTGT
GGATAATTTGGAAACAACTGTGGGAAACTATGTCTTGACTGAGGAAAATTTCTTGAAAATCAATCCCATGATTGGAATAA
CGGATGAAGATATTCAGAACATTTTTGGAGAATAA

Domains

Predicted by InterProScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(661-708)

Helix-hairpin-helix containing domain (HHH_RecD2)

(146-236)

AAA domain (AAA_30)

(331-528)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(573-643)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

41.421

95.153

0.394