Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   I6I32_RS07810 Genome accession   NZ_CP066041
Coordinates   1610001..1611272 (-) Length   423 a.a.
NCBI ID   WP_198464441.1    Uniprot ID   -
Organism   Streptococcus oralis strain FDAARGOS_1075     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1605001..1616272
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I32_RS07780 (I6I32_07780) amaP 1605100..1605663 (-) 564 WP_000045613.1 alkaline shock response membrane anchor protein AmaP -
  I6I32_RS07785 (I6I32_07785) - 1605763..1605999 (-) 237 WP_000964741.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  I6I32_RS07790 (I6I32_07790) - 1606301..1607782 (+) 1482 WP_198464439.1 M protein trans-acting positive regulator PRD domain-containing protein -
  I6I32_RS07795 (I6I32_07795) - 1607940..1609085 (-) 1146 WP_198464440.1 low temperature requirement protein A -
  I6I32_RS07800 (I6I32_07800) - 1609238..1609543 (+) 306 Protein_1495 site-specific integrase -
  I6I32_RS07810 (I6I32_07810) rarA 1610001..1611272 (-) 1272 WP_198464441.1 replication-associated recombination protein A Machinery gene
  I6I32_RS07815 (I6I32_07815) - 1611388..1611858 (+) 471 WP_084880182.1 DUF3013 family protein -
  I6I32_RS07820 (I6I32_07820) - 1611877..1612938 (+) 1062 WP_198464442.1 site-2 protease family protein -
  I6I32_RS07825 (I6I32_07825) - 1612940..1613377 (+) 438 WP_198464443.1 NUDIX hydrolase -
  I6I32_RS07830 (I6I32_07830) - 1613365..1613766 (+) 402 WP_198464444.1 hypothetical protein -
  I6I32_RS07835 (I6I32_07835) prmA 1613745..1614695 (+) 951 WP_198464445.1 50S ribosomal protein L11 methyltransferase -
  I6I32_RS07840 (I6I32_07840) - 1614697..1615440 (+) 744 WP_198464446.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 46936.49 Da        Isoelectric Point: 6.4480

>NTDB_id=453263 I6I32_RS07810 WP_198464441.1 1610001..1611272(-) (rarA) [Streptococcus oralis strain FDAARGOS_1075]
MPDNLALRMRPKTIDQVIGQKHLVGPGKIIRRMVEANRLSSMILYGPPGIGKTSIASAIAGTTKYAFRTFNATVDSKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLESGLVIMIGATTENPFFSVTPAIRSRVQIFELEPLSNQDVKQALQ
IAISDPERGFDFPVELDEDALDFIATSTNGDLRSAFNSLDLAVLSTPENDKGIRHITLDIMENSLQRSYITMDKDGDGHY
DVLSALQKSIRGSDVDASLHYAARLIEAGDLPSLARRLTVIAYEDIGLANPEAQIHTVTALDAAQKIGFPEARILIANVV
IDLALSPKSNSAYVAMDKALTDLKTSGHLPIPRHLRDGHYSGSKELGNAQNYLYPHSYPGHWVKQDYLPEKIRDHHYFSP
EDTGKYERALAQRKETIDKLRNL

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=453263 I6I32_RS07810 WP_198464441.1 1610001..1611272(-) (rarA) [Streptococcus oralis strain FDAARGOS_1075]
ATGCCTGACAATCTCGCGCTTCGCATGCGCCCAAAAACCATCGACCAGGTCATCGGTCAGAAGCATCTGGTCGGACCAGG
AAAAATCATCCGTCGCATGGTGGAGGCCAATCGCCTGTCCTCCATGATTCTCTACGGACCTCCAGGAATCGGCAAGACCA
GTATTGCCTCTGCCATCGCTGGAACGACCAAATATGCCTTTCGGACCTTCAATGCCACTGTTGATAGTAAAAAACGTCTC
CAAGAAATCGCTGAAGAGGCTAAATTCTCAGGTGGCCTTGTACTGCTACTAGACGAGATTCATCGTCTCGATAAAACCAA
GCAAGACTTTCTTCTGCCACTCTTGGAAAGTGGTCTGGTCATCATGATTGGTGCTACGACTGAAAATCCCTTCTTTTCTG
TCACTCCAGCTATTCGCAGTCGTGTTCAGATTTTTGAATTGGAACCCTTGTCCAATCAAGATGTTAAACAAGCCCTGCAA
ATTGCCATCAGCGACCCTGAAAGGGGATTTGACTTCCCAGTTGAGCTAGATGAGGATGCGCTGGATTTCATCGCAACTTC
TACAAACGGAGATTTGCGTTCTGCCTTCAACTCACTTGACTTGGCTGTTCTTTCTACTCCCGAAAATGACAAGGGCATCC
GCCATATCACTCTTGATATCATGGAAAATAGCCTGCAGCGGAGCTACATTACCATGGATAAGGATGGAGATGGACACTAC
GATGTCCTCTCAGCCCTGCAAAAATCCATCCGCGGCTCGGATGTGGATGCTAGTCTCCACTATGCTGCCCGCTTGATTGA
GGCTGGTGATTTGCCTAGTCTAGCGCGCCGCTTGACCGTTATCGCCTATGAAGATATCGGTTTGGCCAATCCTGAAGCCC
AGATTCATACCGTAACTGCTCTAGATGCTGCACAAAAGATTGGTTTCCCAGAAGCTCGTATTCTCATTGCCAATGTCGTG
ATTGATTTGGCCCTTTCTCCAAAATCCAACTCAGCCTATGTGGCTATGGATAAAGCTCTTACCGACCTCAAAACATCAGG
TCATTTGCCTATTCCCCGACACCTGCGTGATGGTCACTACAGTGGAAGCAAGGAACTGGGGAACGCTCAAAACTATCTCT
ACCCCCATAGCTATCCTGGACACTGGGTCAAACAAGATTACTTGCCAGAAAAAATTCGAGATCATCACTACTTCTCTCCA
GAAGATACTGGCAAGTACGAACGGGCCTTAGCTCAACGCAAGGAAACCATTGATAAATTAAGAAACTTGTGA

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)

AAA C-terminal domain (AAA_assoc_2)

(173-251)

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-416)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

57.794

98.582

0.57