Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   I6I32_RS02760 Genome accession   NZ_CP066041
Coordinates   552165..552953 (-) Length   262 a.a.
NCBI ID   WP_000940726.1    Uniprot ID   -
Organism   Streptococcus oralis strain FDAARGOS_1075     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 547165..557953
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I32_RS02735 (I6I32_02735) vex3 547669..549048 (-) 1380 WP_000902987.1 ABC transporter permease subunit Vex3 -
  I6I32_RS02740 (I6I32_02740) vex2 549099..549746 (-) 648 WP_000173736.1 ABC transporter ATP-binding subunit Vex2 -
  I6I32_RS02745 (I6I32_02745) - 549759..551036 (-) 1278 WP_198464869.1 ABC transporter permease -
  I6I32_RS02755 (I6I32_02755) - 551590..552165 (-) 576 WP_084943806.1 cysteine hydrolase family protein -
  I6I32_RS02760 (I6I32_02760) codY 552165..552953 (-) 789 WP_000940726.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  I6I32_RS02765 (I6I32_02765) - 553236..554813 (-) 1578 WP_198464870.1 DEAD/DEAH box helicase -
  I6I32_RS02770 (I6I32_02770) - 555165..556481 (+) 1317 WP_198464871.1 FAD-containing oxidoreductase -
  I6I32_RS02775 (I6I32_02775) murT 556581..557924 (+) 1344 WP_198464872.1 lipid II isoglutaminyl synthase subunit MurT -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29713.07 Da        Isoelectric Point: 5.2488

>NTDB_id=453192 I6I32_RS02760 WP_000940726.1 552165..552953(-) (codY) [Streptococcus oralis strain FDAARGOS_1075]
MAHLLEKTRKITSILKRSEEQLQDELPYNAITRQLADIIDCNACIVNNKGRLLGYFMRYKTNNDRVEQFFQTKTFPEVYV
QGANMIYDTEANLPVEHDLTIFPVESRADFPDGLTTIAPIHVSGIRLGSLIIWRNDKKFEDEDLILVEIASTVVGIQLLN
FQREEDEKNIRRRTAVTMAVNTLSYSELRAVSAILAELDGNEGQLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVLISDIFEEVKKRDY

Nucleotide


Download         Length: 789 bp        

>NTDB_id=453192 I6I32_RS02760 WP_000940726.1 552165..552953(-) (codY) [Streptococcus oralis strain FDAARGOS_1075]
ATGGCACATTTATTAGAAAAAACAAGAAAAATCACGTCTATTCTAAAGCGCTCTGAGGAGCAACTCCAAGATGAACTTCC
TTACAATGCGATCACACGCCAGTTAGCAGATATTATTGACTGTAACGCTTGTATTGTGAATAACAAGGGACGTCTCTTGG
GTTACTTTATGCGTTATAAGACCAATAACGACCGTGTAGAACAATTCTTCCAAACCAAAACCTTCCCTGAGGTCTATGTA
CAAGGGGCAAACATGATTTACGACACGGAAGCCAATCTTCCTGTTGAACATGATTTGACTATTTTCCCTGTGGAGAGCCG
TGCGGACTTTCCAGATGGGTTGACGACCATCGCTCCGATTCATGTATCAGGAATTCGCCTAGGTTCGTTGATCATTTGGC
GCAATGACAAGAAATTTGAAGATGAAGATTTGATCCTTGTCGAGATTGCGAGCACGGTGGTAGGGATTCAACTGTTGAAC
TTCCAACGTGAAGAAGATGAGAAGAATATTCGCCGTCGTACGGCTGTTACCATGGCGGTCAATACCCTTTCCTATTCAGA
ACTTCGTGCCGTATCAGCTATTTTAGCTGAGCTGGATGGAAATGAAGGACAGCTGACTGCGTCTGTTATTGCAGACCGTA
TTGGCATTACGCGCTCAGTGATTGTCAATGCGCTTCGTAAATTGGAGTCGGCGGGAATTATTGAGAGTCGTTCACTAGGA
ATGAAGGGGACCTATCTCAAGGTATTGATTTCAGATATTTTTGAGGAAGTGAAAAAGAGGGACTACTAA

Domains

Predicted by InterProScan.

CodY helix-turn-helix domain (HTH_CodY)

(202-258)

CodY GAF-like domain (CodY)

(3-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

63.359

100

0.634
  codY Bacillus subtilis subsp. subtilis str. 168

50.407

93.893

0.473