Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   BAXH7_RS08800 Genome accession   NC_017191
Coordinates   1791617..1792396 (-) Length   259 a.a.
NCBI ID   WP_013352252.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens XH7     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1786617..1797396
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAXH7_RS08770 (BAXH7_01839) fliH 1786662..1787417 (-) 756 WP_013352257.1 flagellar assembly protein FliH -
  BAXH7_RS08775 (BAXH7_01840) fliG 1787410..1788426 (-) 1017 WP_013352256.1 flagellar motor switch protein FliG -
  BAXH7_RS08780 (BAXH7_01841) fliF 1788439..1790049 (-) 1611 WP_013352255.1 flagellar basal-body MS-ring/collar protein FliF -
  BAXH7_RS08785 (BAXH7_01842) fliE 1790092..1790412 (-) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  BAXH7_RS08790 (BAXH7_01843) flgC 1790423..1790875 (-) 453 WP_013352254.1 flagellar basal body rod protein FlgC -
  BAXH7_RS08795 flgB 1790875..1791263 (-) 389 Protein_1740 flagellar basal body rod protein FlgB -
  BAXH7_RS08800 (BAXH7_01845) codY 1791617..1792396 (-) 780 WP_013352252.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  BAXH7_RS08805 (BAXH7_01846) hslU 1792434..1793837 (-) 1404 WP_014470401.1 HslU--HslV peptidase ATPase subunit -
  BAXH7_RS08810 (BAXH7_01847) hslV 1793854..1794399 (-) 546 WP_013352250.1 ATP-dependent protease subunit HslV -
  BAXH7_RS08815 (BAXH7_01848) xerC 1794415..1795332 (-) 918 WP_013352249.1 tyrosine recombinase XerC -
  BAXH7_RS08820 (BAXH7_01849) trmFO 1795402..1796709 (-) 1308 WP_013352248.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29028.23 Da        Isoelectric Point: 4.6017

>NTDB_id=45313 BAXH7_RS08800 WP_013352252.1 1791617..1792396(-) (codY) [Bacillus amyloliquefaciens XH7]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=45313 BAXH7_RS08800 WP_013352252.1 1791617..1792396(-) (codY) [Bacillus amyloliquefaciens XH7]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGTTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTAGGCTACTCTATTA
ATCAGCAGATCGAAAATGACCGCATGAAAAAAATGCTGGAAGACCGCCAGTTCCCGGAAGAGTACACGAAAAATCTGTTC
AACGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGTGAATACACGGCATTTCCTGTTGAAAACAGAGACCTGTTCCA
GGCAGGCTTAACGACGATTGTCCCGATTATCGGCGGAGGCGAGCGTCTGGGCACATTGATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAAGCACGAAGCAAAGCAGTCGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAACTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTGGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCCGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGAACT
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAATCTTAAATCACATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.614

100

0.996
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467

Multiple sequence alignment