Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   I6H77_RS01695 Genome accession   NZ_CP066021
Coordinates   343449..344237 (-) Length   262 a.a.
NCBI ID   WP_000940726.1    Uniprot ID   -
Organism   Streptococcus oralis strain FDAARGOS_1020     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 338449..349237
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H77_RS01670 (I6H77_01670) vex3 338948..340327 (-) 1380 WP_000903000.1 ABC transporter permease subunit Vex3 -
  I6H77_RS01675 (I6H77_01675) vex2 340378..341025 (-) 648 WP_000173735.1 ABC transporter ATP-binding subunit Vex2 -
  I6H77_RS01680 (I6H77_01680) - 341038..342315 (-) 1278 WP_001068259.1 ABC transporter permease -
  I6H77_RS01690 (I6H77_01690) - 342874..343449 (-) 576 WP_001029650.1 cysteine hydrolase family protein -
  I6H77_RS01695 (I6H77_01695) codY 343449..344237 (-) 789 WP_000940726.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  I6H77_RS01700 (I6H77_01700) - 344522..346096 (-) 1575 WP_000671080.1 DEAD/DEAH box helicase -
  I6H77_RS01705 (I6H77_01705) - 346445..347761 (+) 1317 WP_000958950.1 FAD-containing oxidoreductase -
  I6H77_RS01710 (I6H77_01710) murT 347861..349204 (+) 1344 WP_000769287.1 lipid II isoglutaminyl synthase subunit MurT -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29713.07 Da        Isoelectric Point: 5.2488

>NTDB_id=452949 I6H77_RS01695 WP_000940726.1 343449..344237(-) (codY) [Streptococcus oralis strain FDAARGOS_1020]
MAHLLEKTRKITSILKRSEEQLQDELPYNAITRQLADIIDCNACIVNNKGRLLGYFMRYKTNNDRVEQFFQTKTFPEVYV
QGANMIYDTEANLPVEHDLTIFPVESRADFPDGLTTIAPIHVSGIRLGSLIIWRNDKKFEDEDLILVEIASTVVGIQLLN
FQREEDEKNIRRRTAVTMAVNTLSYSELRAVSAILAELDGNEGQLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVLISDIFEEVKKRDY

Nucleotide


Download         Length: 789 bp        

>NTDB_id=452949 I6H77_RS01695 WP_000940726.1 343449..344237(-) (codY) [Streptococcus oralis strain FDAARGOS_1020]
ATGGCACATTTATTAGAAAAAACAAGAAAAATCACGTCTATTCTAAAGCGCTCTGAGGAGCAACTCCAAGATGAACTTCC
TTACAATGCGATCACACGCCAGTTAGCTGATATTATTGACTGTAACGCTTGTATTGTGAATAACAAGGGACGTCTCTTGG
GCTACTTTATGCGTTATAAGACCAATAATGACCGTGTAGAACAATTCTTCCAAACCAAAACCTTCCCTGAGGTCTATGTA
CAAGGGGCGAACATGATTTATGATACGGAAGCAAATCTTCCTGTTGAACATGATTTGACCATTTTCCCTGTGGAGAGCCG
TGCGGACTTTCCAGATGGGTTGACAACTATTGCTCCGATTCATGTATCAGGGATTCGCCTAGGTTCGTTAATCATTTGGC
GCAATGATAAGAAATTTGAAGATGAAGATTTGATCCTTGTCGAGATTGCGAGCACGGTTGTGGGAATTCAACTATTGAAC
TTCCAACGTGAAGAAGATGAAAAGAATATTCGCCGTCGTACGGCTGTTACCATGGCGGTCAACACCCTTTCCTATTCAGA
ACTGCGTGCCGTATCAGCTATTTTAGCTGAATTGGATGGAAATGAAGGACAGCTGACTGCGTCTGTTATTGCAGACCGTA
TTGGCATTACGCGCTCAGTAATCGTCAATGCTCTCCGTAAGCTAGAGTCGGCAGGAATCATTGAAAGCCGTTCACTAGGA
ATGAAGGGAACCTATCTCAAGGTATTGATTTCAGATATCTTTGAGGAAGTGAAAAAGAGGGACTACTAA

Domains

Predicted by InterProScan.

CodY helix-turn-helix domain (HTH_CodY)

(202-258)

CodY GAF-like domain (CodY)

(3-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

63.359

100

0.634
  codY Bacillus subtilis subsp. subtilis str. 168

50.407

93.893

0.473