Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   I6H76_RS07670 Genome accession   NZ_CP065994
Coordinates   1491796..1492581 (+) Length   261 a.a.
NCBI ID   WP_006532961.1    Uniprot ID   A0AB33ANX2
Organism   Streptococcus infantarius strain FDAARGOS_1019     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1486796..1497581
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H76_RS07655 (I6H76_07655) - 1487801..1488253 (-) 453 WP_006532012.1 universal stress protein -
  I6H76_RS07660 (I6H76_07660) - 1488573..1490339 (+) 1767 WP_115283777.1 glycerophosphoryl diester phosphodiesterase membrane domain-containing protein -
  I6H76_RS07665 (I6H76_07665) - 1490376..1491590 (+) 1215 WP_006532962.1 pyridoxal phosphate-dependent aminotransferase -
  I6H76_RS07670 (I6H76_07670) codY 1491796..1492581 (+) 786 WP_006532961.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  I6H76_RS07675 (I6H76_07675) - 1492581..1493129 (+) 549 WP_006532960.1 cysteine hydrolase family protein -
  I6H76_RS07680 (I6H76_07680) gatC 1493306..1493608 (+) 303 WP_006532958.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  I6H76_RS07685 (I6H76_07685) gatA 1493608..1495074 (+) 1467 WP_006532957.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -
  I6H76_RS07690 (I6H76_07690) gatB 1495074..1496516 (+) 1443 WP_006532956.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -

Sequence

Protein


Download         Length: 261 a.a.        Molecular weight: 28836.91 Da        Isoelectric Point: 4.3995

>NTDB_id=452841 I6H76_RS07670 WP_006532961.1 1491796..1492581(+) (codY) [Streptococcus infantarius strain FDAARGOS_1019]
MPNLLEKTRKITSILQRSVDSLDTELPYNTMAAQLADIIDCNSCIINGGGTLLGYAMKYKTNTDRVEEFFQAKQFPESYV
KAASRVYDTEANLSVDNDLTIFPVESKDIYPDGLTTIAPIYGGGMRLGSLIIWRNDEEFSEDDLILVEIASTVVGIQLLN
LQTENLEETIRKQTAVNMAINTLSYSEMKAVSAILGELDGTEGRLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVINEGIFDKLKEYN

Nucleotide


Download         Length: 786 bp        

>NTDB_id=452841 I6H76_RS07670 WP_006532961.1 1491796..1492581(+) (codY) [Streptococcus infantarius strain FDAARGOS_1019]
ATGCCGAATTTATTAGAAAAAACACGTAAGATTACATCAATTTTGCAACGCTCTGTTGACAGCCTAGATACTGAATTGCC
ATATAACACAATGGCCGCTCAACTTGCTGACATTATTGATTGTAACTCTTGCATCATCAATGGGGGAGGAACCCTTCTTG
GTTATGCAATGAAATACAAAACTAATACTGACCGTGTTGAGGAATTCTTTCAAGCAAAACAATTCCCAGAAAGTTATGTG
AAAGCGGCTAGTCGTGTTTACGATACTGAAGCTAACTTGTCTGTAGATAATGATTTGACAATTTTCCCAGTTGAATCAAA
AGATATCTATCCTGATGGATTGACAACAATCGCCCCAATCTATGGTGGTGGTATGCGCCTTGGTTCTCTTATCATTTGGC
GTAATGATGAAGAGTTCTCCGAAGATGATTTGATCCTTGTTGAAATTGCCTCTACAGTAGTTGGTATCCAATTACTTAAC
CTTCAAACTGAAAACCTTGAAGAAACTATTCGTAAACAAACAGCTGTTAACATGGCCATCAATACTCTTTCTTATTCAGA
AATGAAAGCTGTCTCAGCTATCTTGGGTGAACTGGACGGAACTGAAGGTCGCTTGACTGCATCAGTTATCGCTGACCGTA
TCGGTATCACACGTTCAGTTATCGTTAATGCTCTTCGTAAATTGGAATCAGCAGGTATCATCGAAAGCCGTTCATTGGGT
ATGAAAGGTACATACCTTAAAGTCATCAATGAAGGTATCTTCGACAAATTAAAGGAATATAATTAA

Domains

Predicted by InterProScan.

CodY helix-turn-helix domain (HTH_CodY)

(202-261)

CodY GAF-like domain (CodY)

(3-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AB33ANX2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

65.517

100

0.655
  codY Bacillus subtilis subsp. subtilis str. 168

51.822

94.636

0.49