Detailed information
Bioinformatically predicted
Overview
| Name | rarA | Type | Machinery gene |
| Locus tag | HPAKL117_RS02060 | Genome accession | NC_019560 |
| Coordinates | 413634..414809 (-) | Length | 391 a.a. |
| NCBI ID | WP_015085589.1 | Uniprot ID | - |
| Organism | Helicobacter pylori Aklavik117 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 408634..419809
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPAKL117_RS02025 (HPAKL117_02015) | - | 408942..409256 (+) | 315 | WP_000868000.1 | hypothetical protein | - |
| HPAKL117_RS02030 (HPAKL117_02020) | - | 409234..410010 (+) | 777 | WP_015085584.1 | RNA polymerase sigma factor FliA | - |
| HPAKL117_RS02035 (HPAKL117_02025) | fliM | 410003..411067 (+) | 1065 | WP_015085585.1 | flagellar motor switch protein FliM | - |
| HPAKL117_RS02040 (HPAKL117_02030) | fliY | 411071..411943 (+) | 873 | WP_015085586.1 | flagellar motor switch protein FliY | - |
| HPAKL117_RS02045 (HPAKL117_02035) | - | 411972..412508 (+) | 537 | WP_015085587.1 | YhcH/YjgK/YiaL family protein | - |
| HPAKL117_RS02050 (HPAKL117_02040) | - | 412505..413002 (+) | 498 | WP_015085588.1 | DUF2147 domain-containing protein | - |
| HPAKL117_RS02055 (HPAKL117_02045) | fur | 413022..413474 (-) | 453 | WP_000824985.1 | ferric iron uptake transcriptional regulator | - |
| HPAKL117_RS02060 (HPAKL117_02050) | rarA | 413634..414809 (-) | 1176 | WP_015085589.1 | replication-associated recombination protein A | Machinery gene |
| HPAKL117_RS02065 (HPAKL117_02055) | - | 414806..415177 (-) | 372 | WP_000333001.1 | heat shock protein transcriptional repressor HspR | - |
| HPAKL117_RS02070 (HPAKL117_02060) | - | 415187..416053 (-) | 867 | WP_015085590.1 | DnaJ C-terminal domain-containing protein | - |
| HPAKL117_RS02075 (HPAKL117_02065) | - | 416221..417471 (+) | 1251 | WP_015085591.1 | hypothetical protein | - |
| HPAKL117_RS02080 (HPAKL117_02070) | - | 417535..418401 (-) | 867 | WP_080115098.1 | 5'-3' exonuclease | - |
| HPAKL117_RS02085 (HPAKL117_02080) | - | 418627..419523 (-) | 897 | WP_015085593.1 | OriC activity response regulator | - |
Sequence
Protein
Download Length: 391 a.a. Molecular weight: 43784.42 Da Isoelectric Point: 8.0467
>NTDB_id=45284 HPAKL117_RS02060 WP_015085589.1 413634..414809(-) (rarA) [Helicobacter pylori Aklavik117]
MSLTSLLNPKSLEDFLGQEHLIGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIARALERPILLFNATDFKLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDKLCAK
ALTLLKKQIEPGAKTYLLNNSAGDARALLNLLDLSAKIEDPITLETLQSLRPHSLNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNALNLATSCLFSVKQIGYPEARIILSQCVIYLACSPKSNTAY
RAINQALDCVQKGLLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLNLVSSQGIGFEKTLLEWLDKIRN
MSLTSLLNPKSLEDFLGQEHLIGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIARALERPILLFNATDFKLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDKLCAK
ALTLLKKQIEPGAKTYLLNNSAGDARALLNLLDLSAKIEDPITLETLQSLRPHSLNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNALNLATSCLFSVKQIGYPEARIILSQCVIYLACSPKSNTAY
RAINQALDCVQKGLLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLNLVSSQGIGFEKTLLEWLDKIRN
Nucleotide
Download Length: 1176 bp
>NTDB_id=45284 HPAKL117_RS02060 WP_015085589.1 413634..414809(-) (rarA) [Helicobacter pylori Aklavik117]
ATGAGCCTGACTTCGCTTTTAAACCCAAAAAGCCTAGAAGATTTTTTAGGCCAAGAACATCTAATAGGCAAAGACGCCCC
CTTATTTAAAGCCTTACAATCCAAACACTTCCCCCACGCCTTTTTCTATGGCCCTCCTGGCGTGGGTAAAACAAGCCTGG
CTCAAATCATCGCCCGCGCACTAGAGCGCCCCATTCTTTTATTCAATGCGACAGATTTCAAATTAGAGGATTTACGCCTT
AAGCTTAAAAATTACCAAAACACCCTTTTAAAACCGGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
AGAATTTTTACTCCCCATTATGGAAAAAGATCACGCTTTGATCTTAGGGGCTAGCACGCAAGATCCTAATTACAGCCTAA
GCCATGCGATCCGCTCAAGAAGTTTTATTTTTGAATTGACCCCCCTAAACAAGAGCGATTTAGACAAGCTTTGCGCTAAA
GCTTTAACATTGCTCAAAAAACAAATAGAGCCTGGCGCTAAAACCTATCTTTTAAACAACAGCGCTGGCGATGCTAGAGC
GTTATTAAACCTTTTAGATTTGAGCGCTAAAATAGAAGATCCTATCACTTTAGAAACGCTGCAATCCTTACGGCCTCATA
GCCTAAATGACGGATCTTATAGCGATGATACGCATTATAACCTTACTAGCGCTTTAATCAAGTCTTTAAGAGGGAGCGAT
GAAAACGCTTCCATTTATTATTTGGCGCGCTTGATTGCTGGTGGGGAAAACCCGGAATTTATCGCTAGAAGGCTGGTGAT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCAAACGCCCTAAATTTAGCCACTTCTTGCTTATTTTCAGTCAAACAAA
TCGGCTACCCTGAAGCGCGCATCATTTTAAGCCAATGCGTGATTTATCTGGCTTGTTCGCCCAAGTCTAACACGGCTTAT
AGAGCGATCAACCAGGCTTTGGATTGCGTTCAAAAAGGCTTGCTCTACCCTATTCCTAAACACCTGCTGCCTAACGCTAA
AGACTATCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTGGAAAAACCCCTAAATTTGGTTTCTTCTC
AAGGCATAGGATTTGAAAAAACCCTTTTAGAATGGCTTGATAAGATAAGAAATTGA
ATGAGCCTGACTTCGCTTTTAAACCCAAAAAGCCTAGAAGATTTTTTAGGCCAAGAACATCTAATAGGCAAAGACGCCCC
CTTATTTAAAGCCTTACAATCCAAACACTTCCCCCACGCCTTTTTCTATGGCCCTCCTGGCGTGGGTAAAACAAGCCTGG
CTCAAATCATCGCCCGCGCACTAGAGCGCCCCATTCTTTTATTCAATGCGACAGATTTCAAATTAGAGGATTTACGCCTT
AAGCTTAAAAATTACCAAAACACCCTTTTAAAACCGGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
AGAATTTTTACTCCCCATTATGGAAAAAGATCACGCTTTGATCTTAGGGGCTAGCACGCAAGATCCTAATTACAGCCTAA
GCCATGCGATCCGCTCAAGAAGTTTTATTTTTGAATTGACCCCCCTAAACAAGAGCGATTTAGACAAGCTTTGCGCTAAA
GCTTTAACATTGCTCAAAAAACAAATAGAGCCTGGCGCTAAAACCTATCTTTTAAACAACAGCGCTGGCGATGCTAGAGC
GTTATTAAACCTTTTAGATTTGAGCGCTAAAATAGAAGATCCTATCACTTTAGAAACGCTGCAATCCTTACGGCCTCATA
GCCTAAATGACGGATCTTATAGCGATGATACGCATTATAACCTTACTAGCGCTTTAATCAAGTCTTTAAGAGGGAGCGAT
GAAAACGCTTCCATTTATTATTTGGCGCGCTTGATTGCTGGTGGGGAAAACCCGGAATTTATCGCTAGAAGGCTGGTGAT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCAAACGCCCTAAATTTAGCCACTTCTTGCTTATTTTCAGTCAAACAAA
TCGGCTACCCTGAAGCGCGCATCATTTTAAGCCAATGCGTGATTTATCTGGCTTGTTCGCCCAAGTCTAACACGGCTTAT
AGAGCGATCAACCAGGCTTTGGATTGCGTTCAAAAAGGCTTGCTCTACCCTATTCCTAAACACCTGCTGCCTAACGCTAA
AGACTATCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTGGAAAAACCCCTAAATTTGGTTTCTTCTC
AAGGCATAGGATTTGAAAAAACCCTTTTAGAATGGCTTGATAAGATAAGAAATTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| rarA | Bacillus subtilis subsp. subtilis str. 168 |
36.893 |
100 |
0.389 |