Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   I6H76_RS04835 Genome accession   NZ_CP065994
Coordinates   962144..963412 (+) Length   422 a.a.
NCBI ID   WP_006531695.1    Uniprot ID   A0ABM9XFD5
Organism   Streptococcus infantarius strain FDAARGOS_1019     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 957144..968412
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H76_RS04805 (I6H76_04805) - 957206..958219 (-) 1014 WP_006531687.1 LacI family DNA-binding transcriptional regulator -
  I6H76_RS04810 (I6H76_04810) - 958310..959059 (-) 750 WP_006531688.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  I6H76_RS04815 (I6H76_04815) prmA 959060..960013 (-) 954 WP_006531689.1 50S ribosomal protein L11 methyltransferase -
  I6H76_RS04820 (I6H76_04820) - 960225..961124 (-) 900 Protein_950 GIY-YIG nuclease family protein -
  I6H76_RS04825 (I6H76_04825) - 961126..961596 (-) 471 WP_006531693.1 DUF3013 family protein -
  I6H76_RS04830 (I6H76_04830) - 961660..962154 (+) 495 WP_006531694.1 GNAT family N-acetyltransferase -
  I6H76_RS04835 (I6H76_04835) rarA 962144..963412 (+) 1269 WP_006531695.1 replication-associated recombination protein A Machinery gene
  I6H76_RS04850 (I6H76_04850) - 963869..964771 (-) 903 Protein_954 site-specific integrase -
  I6H76_RS04855 (I6H76_04855) - 964824..965054 (+) 231 WP_006531697.1 hypothetical protein -
  I6H76_RS04860 (I6H76_04860) - 965347..966573 (-) 1227 WP_043878319.1 acetyl-CoA carboxylase biotin carboxylase subunit family protein -
  I6H76_RS04865 (I6H76_04865) - 966575..967828 (-) 1254 WP_006531699.1 MFS transporter -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46640.02 Da        Isoelectric Point: 7.0883

>NTDB_id=452803 I6H76_RS04835 WP_006531695.1 962144..963412(+) (rarA) [Streptococcus infantarius strain FDAARGOS_1019]
MPNNLALRMRPKNIDQVIGQKHLVGEGKIIRRMVEANKLSSMILYGPPGIGKTSIASAIAGTTKYAFRTFNATTDSKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLENGNIIMIGATTENPFFSVTPAIRSRVQIFELEPLSTDDIKQALQ
TALSDKERGFEFDVDIDADALDFIATATNGDLRSAFNSLDLAVMSTKADDKGIRHINLDTVENSLQRSYITMDKNGDGHY
DVLSALQKSIRGSDVNASLHYAARLIEAGDLPSLARRLTVIAYEDIGLANPDAQIHTVTALDAAQKIGFPEARILIANVV
IDLALSPKSNSAYTAIDKAIADLHKNGSLPIPRHLRDGHYAGSKELGNAQDYKYPHNYPEKWVKQQYLPDKLVGKNYFDP
NQTGKYERALSANKERIDHLSK

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=452803 I6H76_RS04835 WP_006531695.1 962144..963412(+) (rarA) [Streptococcus infantarius strain FDAARGOS_1019]
ATGCCAAATAATCTCGCTTTACGGATGCGTCCTAAAAATATCGATCAAGTCATTGGACAAAAGCATCTGGTAGGCGAAGG
AAAAATCATTCGCCGCATGGTAGAAGCTAATAAGCTTTCATCCATGATTCTTTACGGTCCTCCTGGAATTGGAAAGACCT
CAATTGCTAGTGCTATCGCAGGAACAACCAAGTACGCCTTTCGGACCTTCAATGCCACAACCGACAGTAAAAAGCGCCTG
CAAGAAATCGCTGAAGAAGCCAAATTTTCTGGTGGTCTGGTTTTACTCCTTGATGAAATTCATCGTCTCGATAAAACCAA
ACAAGACTTTCTCTTACCCCTACTTGAAAATGGAAATATCATCATGATTGGGGCAACCACAGAAAATCCATTTTTCTCAG
TGACACCCGCCATTCGCTCCCGCGTGCAAATTTTTGAGTTAGAACCTCTATCAACCGACGATATCAAACAAGCCCTACAA
ACTGCATTATCAGATAAAGAGCGCGGCTTTGAATTTGATGTCGATATTGATGCGGATGCTCTTGATTTCATCGCAACAGC
TACCAACGGTGATTTGCGCTCTGCCTTTAACTCGCTAGACTTAGCGGTCATGTCAACCAAAGCTGATGATAAAGGTATTC
GCCACATTAACCTTGATACCGTTGAAAATAGCTTACAGCGCAGCTACATTACCATGGATAAAAACGGCGATGGACACTAC
GACGTGCTCTCAGCTCTTCAAAAATCCATCCGTGGTTCTGACGTTAATGCCAGCCTGCATTACGCAGCTCGCTTGATTGA
AGCTGGAGATTTACCAAGCCTTGCTAGAAGACTGACTGTCATCGCGTATGAAGACATTGGTCTTGCCAATCCCGATGCCC
AGATTCATACCGTCACAGCACTTGATGCAGCTCAAAAAATAGGTTTTCCTGAAGCCCGCATCTTGATTGCTAACGTCGTA
ATTGACCTAGCCTTATCACCAAAATCAAATTCAGCCTACACAGCTATCGACAAAGCTATCGCTGATTTGCACAAAAACGG
CTCACTACCAATCCCACGCCATTTGCGTGATGGACACTATGCTGGTAGTAAAGAGCTAGGTAATGCTCAAGATTACAAAT
ACCCTCACAACTATCCTGAAAAATGGGTGAAACAACAATACCTTCCAGATAAATTGGTCGGTAAAAATTATTTTGACCCC
AACCAAACAGGAAAATACGAGCGTGCCCTCAGTGCCAATAAAGAACGCATCGATCATTTATCAAAATAA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(173-251)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-416)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

60.859

99.289

0.604