Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   I6H76_RS03465 Genome accession   NZ_CP065994
Coordinates   689143..689805 (-) Length   220 a.a.
NCBI ID   WP_006531183.1    Uniprot ID   A0ABM9XGY7
Organism   Streptococcus infantarius strain FDAARGOS_1019     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 684143..694805
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H76_RS03460 (I6H76_03460) hpf 688518..689066 (-) 549 WP_006531184.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  I6H76_RS03465 (I6H76_03465) comFC/cflB 689143..689805 (-) 663 WP_006531183.1 ComF family protein Machinery gene
  I6H76_RS03470 (I6H76_03470) comFA/cflA 689805..691103 (-) 1299 WP_006531182.1 DEAD/DEAH box helicase Machinery gene
  I6H76_RS03475 (I6H76_03475) - 691158..691784 (+) 627 WP_006531181.1 YigZ family protein -
  I6H76_RS03480 (I6H76_03480) cysK 691884..692813 (+) 930 WP_006531180.1 cysteine synthase A -
  I6H76_RS03485 (I6H76_03485) - 692914..693270 (-) 357 WP_006531179.1 S1 RNA-binding domain-containing protein -
  I6H76_RS03490 (I6H76_03490) - 693270..694670 (-) 1401 WP_081442254.1 Cof-type HAD-IIB family hydrolase -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 25653.90 Da        Isoelectric Point: 9.3049

>NTDB_id=452787 I6H76_RS03465 WP_006531183.1 689143..689805(-) (comFC/cflB) [Streptococcus infantarius strain FDAARGOS_1019]
MICLLCGQEFSEKETFLGIITMRKSRYLICKECQENFEKIGDDHCPTCYRKGSKEQCDDCKKWAKENHKVSHQALYTYNE
ATKEYFSKYKFQGDAMLSHVFAKEVKQVLKNYKGYTIIPVPLSKERMKERQFNQVTAILNAAKIPYHDILEKKDIKKQSE
KSRKERLTSDCPFRIKSDIQIPDKVLILDDIYTTGATLKGICHLFFEKGAKIVKSLTIVR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=452787 I6H76_RS03465 WP_006531183.1 689143..689805(-) (comFC/cflB) [Streptococcus infantarius strain FDAARGOS_1019]
ATGATATGTTTGCTTTGCGGACAAGAATTTTCTGAGAAGGAAACTTTTCTAGGAATTATTACAATGCGCAAAAGCCGTTA
CTTGATTTGCAAAGAGTGTCAGGAAAACTTTGAAAAAATTGGTGATGACCACTGTCCAACGTGCTACCGAAAAGGCAGTA
AAGAGCAGTGTGATGATTGCAAGAAGTGGGCAAAAGAAAATCATAAAGTTTCGCACCAAGCACTGTATACTTACAATGAA
GCCACGAAAGAGTATTTTTCAAAGTACAAATTTCAAGGAGATGCTATGCTAAGCCATGTTTTTGCAAAAGAAGTCAAACA
AGTTTTGAAGAATTATAAAGGCTATACTATTATTCCAGTACCCTTAAGCAAAGAAAGGATGAAAGAAAGACAATTCAATC
AAGTTACAGCCATTCTAAATGCTGCCAAAATTCCCTATCATGATATTTTAGAGAAGAAAGATATTAAAAAGCAATCTGAA
AAAAGTAGAAAAGAAAGACTGACAAGTGATTGTCCTTTTAGGATTAAATCAGATATTCAGATACCAGATAAAGTATTAAT
TCTTGATGATATTTACACAACGGGAGCAACTTTAAAAGGAATTTGTCACTTATTTTTTGAAAAAGGAGCAAAGATTGTAA
AAAGTTTAACAATTGTACGGTAA

Domains

Predicted by InterProScan.

Phosphoribosyl transferase domain (Pribosyltran)

(138-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus pneumoniae TIGR4

45

100

0.45
  comFC/cflB Streptococcus pneumoniae Rx1

45

100

0.45
  comFC/cflB Streptococcus pneumoniae D39

45

100

0.45
  comFC/cflB Streptococcus pneumoniae R6

45

100

0.45
  comFC/cflB Streptococcus mitis NCTC 12261

44.545

100

0.445
  comFC/cflB Streptococcus mitis SK321

43.636

100

0.436