Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   HT132_RS12470 Genome accession   NZ_CP054479
Coordinates   2548466..2549245 (-) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus amyloliquefaciens strain R8-25     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2543466..2554245
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HT132_RS12440 (HT132_12440) fliH 2543510..2544265 (-) 756 WP_061861457.1 flagellar assembly protein FliH -
  HT132_RS12445 (HT132_12445) fliG 2544258..2545274 (-) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  HT132_RS12450 (HT132_12450) fliF 2545287..2546897 (-) 1611 WP_003154257.1 flagellar basal-body MS-ring/collar protein FliF -
  HT132_RS12455 (HT132_12455) fliE 2546940..2547260 (-) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  HT132_RS12460 (HT132_12460) flgC 2547271..2547723 (-) 453 WP_015239851.1 flagellar basal body rod protein FlgC -
  HT132_RS12465 (HT132_12465) flgB 2547723..2548112 (-) 390 WP_100261777.1 flagellar basal body rod protein FlgB -
  HT132_RS12470 (HT132_12470) codY 2548466..2549245 (-) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  HT132_RS12475 (HT132_12475) hslU 2549283..2550695 (-) 1413 WP_255247556.1 HslU--HslV peptidase ATPase subunit -
  HT132_RS12480 (HT132_12480) hslV 2550703..2551248 (-) 546 WP_014417767.1 ATP-dependent protease subunit HslV -
  HT132_RS12485 (HT132_12485) xerC 2551264..2552181 (-) 918 WP_007409774.1 tyrosine recombinase XerC -
  HT132_RS12490 (HT132_12490) trmFO 2552251..2553558 (-) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=452787 HT132_RS12470 WP_003154263.1 2548466..2549245(-) (codY) [Bacillus amyloliquefaciens strain R8-25]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=452787 HT132_RS12470 WP_003154263.1 2548466..2549245(-) (codY) [Bacillus amyloliquefaciens strain R8-25]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTAGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTTAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471