Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   I6H76_RS01795 Genome accession   NZ_CP065994
Coordinates   359039..360835 (-) Length   598 a.a.
NCBI ID   WP_006532469.1    Uniprot ID   A0ABM9XDJ2
Organism   Streptococcus infantarius strain FDAARGOS_1019     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 354039..365835
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H76_RS01775 (I6H76_01775) - 355132..355734 (-) 603 WP_006532473.1 nitroreductase family protein -
  I6H76_RS01780 (I6H76_01780) - 355877..357595 (-) 1719 WP_043878411.1 hypothetical protein -
  I6H76_RS01785 (I6H76_01785) - 357710..358665 (-) 956 Protein_357 ketopantoate reductase family protein -
  I6H76_RS01790 (I6H76_01790) - 358690..359052 (-) 363 WP_006532470.1 ACT domain-containing protein -
  I6H76_RS01795 (I6H76_01795) uvrC 359039..360835 (-) 1797 WP_006532469.1 excinuclease ABC subunit UvrC Machinery gene
  I6H76_RS01800 (I6H76_01800) - 360955..362331 (-) 1377 WP_043878409.1 NAD-dependent succinate-semialdehyde dehydrogenase -
  I6H76_RS01805 (I6H76_01805) - 362483..363508 (-) 1026 WP_408641644.1 YeiH family protein -
  I6H76_RS01810 (I6H76_01810) - 363615..364481 (+) 867 WP_006532465.1 LysR family transcriptional regulator -
  I6H76_RS01815 (I6H76_01815) - 364561..365232 (+) 672 WP_043878408.1 Crp/Fnr family transcriptional regulator -

Sequence

Protein


Download         Length: 598 a.a.        Molecular weight: 69055.78 Da        Isoelectric Point: 9.2098

>NTDB_id=452767 I6H76_RS01795 WP_006532469.1 359039..360835(-) (uvrC) [Streptococcus infantarius strain FDAARGOS_1019]
MNELIKHKLELLPDSPGCYIHKDKNGKIIYVGKAKNLKNRVRSYFHGSHNTKTELLVSEIEDFEYIVTGSNTEALLLEIN
LIQENMPKYNIKLKDDKSYPFIKITVNEQYPRLMITRQIKKDGAMYFGPYPDSGAATEIKRLLDRIFPFKKCTNPANKVC
FYYHLGQCKAHTICHVDHDYFVEMAQDVKNFLDGKDNKIVDGLKDKMQKASDMMEFERAAEYRDLLQAISTLRTKQRVMN
QDMMDRDIFGYYVDKGWMCVQVFFVRQGKLIQRDVNMFPYYNDPEEDFLTYVGQFYRDSKHFIPKEIFIPQDIDEELVKA
VVDTKVIKPQRGEKKQLVNLAIKNARVSLQQKFDLLEKDIRKTHGAIENIGELLNIPKPVRIEAFDNSNIQGTSPVAGMV
VFVNGKPSKKNYRKFKIKTVVGPDDYASMREVIYRRYSRVMKDGLTPPDLIIIDGGQGQVNVARDVIENKLGLDIPIAGL
QKNDKHQTHELLFGDPLEVVELPRNSEEFFLLQRIQDEVHRFAITFHRQLRSKNSFSSKLDGIAGLGPKRKQLLMKHFKS
LPNVQKADVEDIINCGIPRNVAVVVKEKLAEEKADVNH

Nucleotide


Download         Length: 1797 bp        

>NTDB_id=452767 I6H76_RS01795 WP_006532469.1 359039..360835(-) (uvrC) [Streptococcus infantarius strain FDAARGOS_1019]
ATGAATGAACTGATTAAACATAAATTGGAATTACTGCCAGATAGCCCTGGTTGTTATATCCATAAAGATAAAAACGGCAA
GATTATCTATGTTGGAAAAGCTAAGAATCTGAAAAATCGTGTGCGCAGCTATTTTCATGGTAGCCACAATACCAAGACTG
AACTCTTGGTTTCTGAAATTGAAGATTTTGAATACATTGTCACAGGGTCAAATACAGAAGCCCTTCTTCTTGAAATCAAT
CTGATTCAAGAAAACATGCCAAAGTATAACATCAAGCTTAAAGATGATAAATCTTATCCATTTATCAAAATTACGGTGAA
TGAGCAGTACCCACGCTTGATGATTACCCGTCAAATCAAAAAAGATGGTGCCATGTACTTTGGCCCTTACCCTGATTCAG
GGGCAGCGACAGAGATTAAACGACTTTTGGATCGCATTTTTCCCTTTAAAAAATGTACCAATCCTGCTAACAAGGTTTGT
TTTTATTACCATTTAGGTCAATGTAAAGCTCATACCATCTGTCATGTGGACCATGATTATTTTGTTGAAATGGCGCAAGA
CGTCAAGAATTTTCTTGATGGCAAAGACAATAAAATCGTCGATGGCTTGAAAGACAAAATGCAAAAAGCGTCAGACATGA
TGGAATTTGAACGCGCAGCTGAATACCGTGATTTGCTGCAAGCCATCTCAACTCTTCGTACTAAACAACGTGTCATGAAC
CAAGATATGATGGACCGTGATATTTTTGGTTATTATGTCGACAAAGGTTGGATGTGTGTTCAGGTTTTCTTTGTTCGCCA
AGGAAAACTCATTCAACGTGATGTCAACATGTTTCCTTACTACAATGACCCAGAGGAAGATTTCTTAACCTATGTCGGAC
AATTTTACCGCGACAGCAAGCATTTTATTCCAAAAGAAATCTTTATTCCTCAGGACATTGACGAAGAATTAGTTAAAGCA
GTGGTAGATACTAAGGTCATTAAACCGCAACGCGGTGAGAAGAAACAGCTGGTCAATCTAGCCATAAAAAATGCGCGTGT
CAGCCTGCAACAAAAATTTGACTTGCTAGAGAAAGATATCCGCAAAACACATGGCGCTATTGAAAATATCGGTGAATTGC
TCAATATTCCAAAACCTGTGCGCATTGAAGCTTTTGATAACTCAAATATTCAAGGAACAAGCCCAGTTGCTGGGATGGTT
GTTTTTGTTAATGGAAAACCAAGTAAGAAAAATTACCGCAAATTTAAGATTAAAACTGTGGTTGGACCAGATGACTATGC
CAGCATGCGCGAGGTCATTTATCGTAGATACAGTCGTGTCATGAAAGACGGGCTGACACCACCAGATTTGATTATCATCG
ATGGTGGTCAAGGTCAGGTTAATGTTGCACGTGATGTCATTGAAAATAAACTTGGACTCGATATTCCAATCGCTGGTCTG
CAAAAAAATGACAAGCACCAAACGCATGAATTACTCTTTGGTGACCCATTAGAAGTTGTCGAATTGCCACGAAATTCTGA
AGAATTCTTCTTGCTTCAACGTATCCAAGATGAGGTTCACCGATTTGCCATTACCTTCCACCGTCAACTACGTTCCAAAA
ATTCATTCTCATCAAAACTCGATGGTATTGCTGGCTTGGGACCAAAACGCAAGCAATTACTCATGAAACACTTTAAGAGC
TTGCCAAATGTCCAAAAAGCCGATGTTGAGGATATCATCAATTGTGGCATTCCACGAAATGTTGCCGTAGTTGTTAAGGA
AAAATTGGCTGAAGAGAAAGCGGATGTTAACCATTAA

Domains

Predicted by InterProScan.

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(372-524)

UvrB/uvrC motif (UVR)

(199-230)

GIY-YIG catalytic domain (GIY-YIG)

(17-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae TIGR4

77.19

100

0.781
  uvrC Streptococcus pneumoniae R6

77.025

100

0.779
  uvrC Streptococcus pneumoniae D39

77.025

100

0.779