Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   HSZ49_RS06335 Genome accession   NZ_CP054438
Coordinates   1293448..1295832 (+) Length   794 a.a.
NCBI ID   WP_129530968.1    Uniprot ID   -
Organism   Staphylococcus saprophyticus strain UTI-042y     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1288448..1300832
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HSZ49_RS06315 (HSZ49_06315) sal 1288697..1290328 (+) 1632 WP_081327038.1 Sal family ABC-F type ribosomal protection protein -
  HSZ49_RS06320 (HSZ49_06320) - 1290389..1291531 (+) 1143 WP_041080572.1 cysteine desulfurase family protein -
  HSZ49_RS06325 (HSZ49_06325) mnmA 1291532..1292644 (+) 1113 WP_069825900.1 tRNA 2-thiouridine(34) synthase MnmA -
  HSZ49_RS06330 (HSZ49_06330) - 1292779..1293444 (+) 666 WP_069825899.1 tetratricopeptide repeat protein -
  HSZ49_RS06335 (HSZ49_06335) recD2 1293448..1295832 (+) 2385 WP_129530968.1 ATP-dependent RecD-like DNA helicase Machinery gene
  HSZ49_RS06340 (HSZ49_06340) alaS 1296181..1298811 (+) 2631 WP_069825897.1 alanine--tRNA ligase -
  HSZ49_RS06345 (HSZ49_06345) - 1298881..1299141 (+) 261 WP_002483121.1 IreB family regulatory phosphoprotein -
  HSZ49_RS06350 (HSZ49_06350) ruvX 1299145..1299573 (+) 429 WP_011302969.1 Holliday junction resolvase RuvX -
  HSZ49_RS06355 (HSZ49_06355) - 1299590..1299922 (+) 333 WP_002483123.1 DUF1292 domain-containing protein -

Sequence

Protein


Download         Length: 794 a.a.        Molecular weight: 89369.99 Da        Isoelectric Point: 4.5639

>NTDB_id=452497 HSZ49_RS06335 WP_129530968.1 1293448..1295832(+) (recD2) [Staphylococcus saprophyticus strain UTI-042y]
MGDPTLFNNSMIKGTVDAILFQNKENFYTVLKVDTIESSETFDSMPTIVGFFPEIAEGDVYTFKGQVVTHPKYGKQLKAE
TFEKELPQTKEAIISYLSSDLFKGIGKKTAQSIVNKLGENAISDILNDPSVLEQVPGLPKKKQKQIAEQIASNQETEQII
IRLHDLGFGPKLAMAIYQAYLGETLNVVENKPYQLVYDVKGIGFNKADTLARNVGIQFNDTERLKAGLLYVLEEECIKQG
HTYLPTQNVLEMTQDMLSQAPSEIIEMQQLNHVLQELVNDTKLIQQENEVAIPSLYYSELKSVQNLYRNYAYTNKLKQIE
QSDLLMKIGEIEERNQVNYANSQKDALQTAINSKIMLLTGGPGTGKTTVIKGIVELYAEIHGLSLNYDDYQNDDYPVVLG
APTGRASKRLAESTGLEAMTIHRLIGWNQDTQPEDILDNEISAKLIIIDEMSMVDTWLFHQFLSAVPIDAQIILVGDEDQ
LPSVGPGQVFKDLIDSKVIPRVNLTEVYRQQDGSSIIELAHRMKLGEPIDITQRFHDRNFINCNTDQIPTVVEKVVSSAV
NKGYDMSDIQVLAPMYKGSAGIKKLNMVLQDILNPKDKDTREIEFGDVLFRKGDKVLQLVNRPNDNIFNGDIGVIVGVFW
AKENALNKDVLVVDFEGNEITFVRQDLIELTHAYCTSIHKSQGSEFPIVIMPMVKQYFRMLQKPILYTGLTRAKQSLVFL
GDPQAFDIGLKTHGQVRMTQLCTFLKAYFNNDASTEEEISDTFDADIILTEDNIFKINPMINMGDISPYDFVED

Nucleotide


Download         Length: 2385 bp        

>NTDB_id=452497 HSZ49_RS06335 WP_129530968.1 1293448..1295832(+) (recD2) [Staphylococcus saprophyticus strain UTI-042y]
ATGGGAGACCCTACACTATTTAATAATTCAATGATTAAAGGAACCGTTGATGCGATTTTATTTCAAAATAAAGAAAATTT
TTATACGGTTTTAAAAGTTGATACAATTGAGTCAAGTGAAACATTTGATTCAATGCCTACGATTGTAGGGTTTTTCCCAG
AAATTGCTGAAGGTGATGTTTATACATTCAAAGGCCAAGTTGTTACACATCCGAAGTATGGTAAACAACTTAAAGCTGAA
ACGTTTGAAAAAGAATTACCACAAACTAAAGAGGCAATTATTAGTTATTTATCAAGTGATTTATTTAAAGGTATTGGTAA
AAAAACTGCGCAAAGTATTGTTAATAAACTAGGTGAAAATGCTATAAGCGATATCTTGAATGACCCGTCGGTATTAGAGC
AAGTACCTGGTTTACCTAAGAAAAAGCAAAAACAAATTGCTGAACAAATTGCTAGTAATCAAGAGACGGAGCAAATTATC
ATACGCTTACATGATTTAGGGTTTGGACCAAAACTAGCTATGGCGATTTACCAAGCGTATTTAGGAGAAACACTTAATGT
TGTTGAAAATAAACCCTACCAACTCGTATATGATGTAAAAGGAATTGGATTTAATAAAGCTGATACCTTAGCACGAAATG
TTGGAATCCAGTTCAATGATACAGAAAGACTAAAAGCGGGTTTGTTATATGTACTTGAAGAGGAATGTATTAAGCAAGGA
CATACATATTTACCTACTCAAAATGTATTAGAAATGACTCAAGATATGCTTTCTCAAGCACCTAGTGAAATAATAGAAAT
GCAACAATTGAATCATGTATTACAAGAATTGGTAAATGATACCAAACTCATTCAACAAGAAAATGAAGTTGCAATTCCGA
GTTTATATTATTCAGAATTAAAAAGTGTGCAGAATCTTTATCGCAATTATGCGTATACGAATAAACTCAAACAAATAGAA
CAGTCTGATCTTTTAATGAAGATTGGAGAAATTGAAGAGCGCAATCAAGTTAATTATGCAAATTCACAAAAAGATGCGTT
ACAGACTGCTATTAATTCTAAAATTATGTTACTCACAGGTGGTCCTGGTACAGGTAAAACAACTGTGATAAAAGGTATTG
TAGAATTATATGCAGAAATTCATGGTCTCTCATTAAATTATGATGATTATCAAAATGATGATTATCCAGTCGTATTAGGT
GCGCCTACAGGAAGAGCTTCAAAGCGTTTGGCAGAGTCGACAGGTTTAGAAGCCATGACAATTCATCGCTTAATCGGATG
GAATCAGGATACACAACCGGAAGATATTTTAGATAATGAAATATCAGCAAAATTAATTATCATTGATGAGATGTCTATGG
TTGATACATGGCTGTTCCACCAATTTTTAAGTGCAGTTCCAATAGATGCACAAATCATTTTAGTAGGTGATGAAGATCAA
TTGCCTTCTGTAGGTCCTGGTCAAGTATTTAAAGATTTAATTGATTCAAAAGTGATTCCTCGTGTTAATTTAACAGAAGT
TTATAGACAACAAGATGGTTCTAGTATTATTGAATTAGCGCATCGGATGAAACTAGGTGAACCGATTGATATAACCCAAC
GTTTTCATGATCGAAATTTTATAAATTGTAATACAGATCAGATTCCGACAGTTGTGGAAAAAGTTGTTTCAAGCGCTGTG
AATAAAGGCTATGATATGAGTGATATTCAAGTGCTTGCACCAATGTATAAAGGGTCAGCAGGCATAAAAAAACTTAATAT
GGTATTACAAGATATTTTAAATCCTAAGGATAAAGATACACGTGAAATAGAATTTGGTGATGTGCTTTTTAGAAAAGGTG
ACAAAGTCTTGCAACTTGTAAATAGGCCTAATGATAATATTTTCAACGGTGATATTGGTGTAATCGTGGGTGTTTTTTGG
GCAAAAGAAAATGCGTTGAACAAAGATGTATTAGTCGTTGATTTTGAAGGTAATGAAATTACTTTTGTTCGTCAAGATTT
AATAGAATTAACTCATGCTTATTGTACGTCGATCCATAAATCACAAGGTTCTGAATTCCCAATAGTCATCATGCCTATGG
TAAAACAATACTTTAGAATGCTACAAAAGCCCATATTATATACTGGCTTAACAAGGGCTAAACAATCCCTTGTCTTTTTA
GGTGATCCGCAAGCCTTTGATATTGGTTTAAAAACGCATGGACAAGTGAGAATGACACAGTTATGCACATTTTTAAAAGC
CTACTTTAATAACGATGCATCTACTGAAGAAGAAATCAGCGACACATTTGATGCTGATATCATTCTAACTGAAGACAATA
TTTTTAAAATTAACCCAATGATTAATATGGGAGATATTTCCCCATATGACTTCGTTGAAGATTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(153-243)

AAA domain (AAA_30)

(339-545)

Helix-hairpin-helix domain (HHH_5)

(103-149)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(585-655)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(672-719)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

51.008

100

0.51