Detailed information NTG0045246

Bioinformatically predicted

Overview

• Name: recD/recD2/recDB
• Type: Machinery gene
• Locus tag: SDSE_RS19840
• Genome accession: NC_019042
• Coordinates: 1886709..1889162 (+)
• Length: 817 a.a.
• NCBI ID: WP_015058038.1
• Uniprot ID: -
• Organism: Streptococcus dysgalactiae subsp. equisimilis AC-2713
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1881709..1894162

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SDSE_RS19820 (S_dysgal_equisimilis_AC2713_1944)	-	1884123..1884668 (-)	546	WP_015058036.1	CvpA family protein	-
SDSE_RS19825 (S_dysgal_equisimilis_AC2713_1945)	-	1884671..1884979 (-)	309	WP_003052702.1	hypothetical protein	-
SDSE_RS19830 (S_dysgal_equisimilis_AC2713_1946)	rnhC	1885136..1886034 (+)	899	Protein_1780	ribonuclease HIII	-
SDSE_RS19835 (S_dysgal_equisimilis_AC2713_1947)	lepB	1886056..1886649 (+)	594	WP_012767541.1	signal peptidase I	-
SDSE_RS19840 (S_dysgal_equisimilis_AC2713_1948)	recD/recD2/recDB	1886709..1889162 (+)	2454	WP_015058038.1	ATP-dependent RecD-like DNA helicase	Machinery gene
SDSE_RS19845 (S_dysgal_equisimilis_AC2713_1949)	-	1889253..1889741 (+)	489	WP_003056836.1	hypothetical protein	-
SDSE_RS19850 (S_dysgal_equisimilis_AC2713_1950)	dinB	1889830..1890927 (-)	1098	WP_015058039.1	DNA polymerase IV	-
SDSE_RS19855 (S_dysgal_equisimilis_AC2713_1951)	pflB	1891136..1893463 (+)	2328	WP_003056840.1	formate C-acetyltransferase	-
SDSE_RS19860 (S_dysgal_equisimilis_AC2713_1952)	-	1893568..1894020 (+)	453	WP_003056842.1	GNAT family N-acetyltransferase	-

Sequence

Protein

• Length: 817 a.a.
• Molecular weight: 91331.21 Da
• Isoelectric Point: 4.5579

>NTDB_id=45246 SDSE_RS19840 WP_015058038.1 1886709..1889162(+) (recD/recD2/recDB) [Streptococcus dysgalactiae subsp. equisimilis AC-2713]
MEHFFTGTVDRIIFENAANFFKILLLAIEDTDSDIDDFEIIITGTMADIIEGDDYTFWGELTQHPKYGQQLKLSRYQKVK
PSSSGLVNYFSSDHFKGIGKKTAEKIIALYGNNTIDHILEDPSKLETISGLSKANRQAFVAKLKLNYGTEQLIAGLVELG
LSNRFAFQAFEKYKEEALDLVKENPYQLVEDLQGFGFKMADALAENLGIESDSPKRFRAALLHCLLEESINRGDTYVQAR
QLLDFAITLLEDARQVECDPAAVAEQLSELIIEGKIKNSDTKLFDASLYFAEEGIAKNISRLLDTPLSQSFSHDTIQTTI
QAVQEDFAITYDQVQQEAIAKALTSKVFLLTGGPGTGKTTVIRGILQAYANLHQIDLDKKDLPILLAAPTGRAARRMNEL
TGLPSATIHRHLGLNGDNDYQAMEDYLDCDLLIVDEFSMVDTWLANQLLAAISSTTQVIIVGDSDQLPSVGPGQVLSDLL
KVNSLPQIALQKIFRQSQESTIVDLADQMRRGILAADFRDKKADRSYFEAQASFIPDMIQKIVLSAIKSGIPAEEIQILA
PMYKGQAGINHLNQLMQNLLNPLEGQTEFLFNDTHFRKGDKVLHLVNDAQLNVFNGDIGYITDLIPAKYTESKQDELILD
FDGSEVTYPRNEWLKLTLAYAMSIHKSQGSEFQVVILPITRQSGRLLQRNLIYTAITRSKSKLIMLGEFAAFDYAIKNEG
DKRQTYLVERFQEQSDLASSQPNQELKSKEQTSLFSNTAALEDDSQKSSSQSTNSNPTENSQSDNDDFRLTPENYSTIDS
MIGLTESDIALFFQKKF

Nucleotide

• Length: 2454 bp

>NTDB_id=45246 SDSE_RS19840 WP_015058038.1 1886709..1889162(+) (recD/recD2/recDB) [Streptococcus dysgalactiae subsp. equisimilis AC-2713]
ATGGAACACTTTTTTACTGGTACTGTTGACCGCATTATCTTTGAAAATGCAGCTAATTTTTTTAAAATTCTCCTCCTTGC
CATCGAAGACACAGATAGTGATATTGACGACTTTGAAATCATTATCACAGGGACGATGGCTGACATTATTGAAGGAGATG
ACTACACCTTTTGGGGGGAATTGACCCAGCACCCTAAATATGGACAGCAACTCAAACTAAGCCGTTACCAAAAAGTCAAA
CCTAGTTCATCTGGTTTGGTTAATTATTTCTCCAGCGACCATTTTAAGGGGATTGGAAAGAAAACAGCGGAGAAAATCAT
TGCCCTCTATGGCAATAATACTATTGACCATATTTTAGAAGACCCAAGTAAATTAGAAACTATTTCTGGTCTGTCCAAAG
CTAATCGTCAAGCCTTTGTCGCTAAACTGAAATTGAATTATGGCACAGAGCAACTGATTGCTGGTCTCGTCGAACTTGGC
CTTAGCAACCGTTTTGCCTTTCAAGCGTTTGAGAAGTACAAAGAAGAGGCTCTTGACCTTGTTAAAGAAAATCCCTATCA
ATTAGTCGAAGATCTACAAGGTTTTGGGTTTAAAATGGCAGATGCTCTCGCTGAAAACTTAGGGATTGAAAGCGACTCTC
CGAAACGTTTTCGTGCAGCCCTCCTTCACTGTCTCTTGGAAGAATCCATCAATCGAGGAGATACTTATGTCCAAGCACGA
CAATTATTAGACTTTGCCATCACACTCCTTGAAGATGCACGTCAAGTAGAATGTGACCCTGCTGCTGTGGCTGAACAACT
AAGCGAGTTAATCATAGAGGGCAAAATCAAAAACAGTGACACCAAATTGTTTGATGCTAGCCTTTATTTTGCTGAAGAGG
GGATTGCTAAGAATATCTCTCGTCTCTTAGATACCCCTTTAAGTCAGTCATTTAGTCATGATACCATCCAAACAACCATC
CAAGCCGTTCAAGAAGACTTTGCTATCACTTATGACCAGGTGCAGCAAGAAGCCATTGCTAAAGCCTTAACCAGCAAGGT
ATTTCTCCTAACAGGTGGTCCCGGAACAGGGAAAACAACTGTTATTCGAGGCATTTTACAGGCTTACGCTAACCTGCATC
AGATTGATTTGGATAAAAAAGACCTTCCTATCTTGTTAGCAGCTCCAACAGGTCGGGCTGCACGTCGCATGAATGAGTTG
ACTGGACTTCCTAGCGCAACCATCCACAGGCACTTAGGCCTCAACGGCGACAACGATTACCAAGCCATGGAAGATTATCT
AGACTGCGACTTGCTGATTGTCGATGAATTTTCAATGGTGGATACCTGGCTTGCCAACCAATTGTTAGCAGCGATTAGTT
CAACAACTCAAGTAATTATTGTCGGAGATAGTGACCAGCTTCCTTCGGTTGGACCCGGTCAAGTCCTGTCAGATCTTTTA
AAAGTCAATAGCCTGCCCCAAATCGCCTTGCAAAAGATATTTCGTCAATCCCAAGAATCTACTATTGTAGATTTGGCAGA
CCAGATGCGTCGAGGAATCTTAGCTGCTGACTTTCGTGACAAAAAAGCTGACCGTTCTTATTTTGAAGCCCAAGCCTCTT
TCATCCCGGACATGATTCAAAAAATTGTTCTATCTGCTATTAAAAGTGGCATCCCTGCTGAGGAAATTCAAATTTTAGCG
CCTATGTACAAAGGACAGGCTGGCATCAATCATCTTAACCAATTGATGCAAAACCTCCTCAACCCTTTGGAAGGGCAAAC
GGAATTTCTGTTCAATGATACGCATTTTCGTAAAGGTGATAAAGTCTTGCACTTAGTCAACGATGCTCAGTTGAATGTCT
TTAACGGAGATATTGGTTATATTACAGATTTGATTCCTGCTAAATATACCGAATCTAAGCAAGACGAATTAATCTTAGAT
TTTGACGGTAGCGAAGTAACGTATCCTAGAAATGAATGGCTAAAATTAACCTTAGCCTATGCCATGAGCATTCATAAGTC
ACAAGGGAGCGAGTTTCAAGTGGTGATTTTACCCATCACACGCCAAAGCGGCCGACTTTTGCAACGAAATTTAATTTATA
CTGCTATCACCCGTTCTAAAAGTAAGTTGATTATGCTAGGTGAATTTGCAGCCTTTGACTATGCTATTAAAAATGAAGGG
GATAAACGGCAAACTTATTTGGTGGAACGCTTCCAAGAACAATCCGACTTAGCCTCCTCTCAACCTAACCAAGAGCTAAA
ATCAAAAGAGCAGACCTCCCTTTTTTCTAATACGGCAGCCCTTGAGGACGACTCTCAAAAATCTTCCTCTCAATCAACAA
ACTCTAACCCCACTGAGAACTCTCAGTCAGATAATGATGATTTTAGGTTAACACCTGAGAATTATTCGACTATCGATTCG
ATGATAGGGCTTACAGAATCAGATATTGCCCTCTTTTTCCAGAAAAAATTCTAG

Domains

Predicted by InterProScan.

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (572-641)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (659-705)

• AAA domain (AAA_30) (331-522)

• Helix-hairpin-helix containing domain (HHH_RecD2) (147-236)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD/recD2/recDB	Bacillus subtilis subsp. subtilis str. 168	42.308	92.289	0.39