Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   LL3_RS08445 Genome accession   NC_017190
Coordinates   1651679..1652458 (+) Length   259 a.a.
NCBI ID   WP_013352252.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens LL3     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1646679..1657458
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LL3_RS08425 (LL3_01772) trmFO 1647366..1648673 (+) 1308 WP_013352248.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  LL3_RS08430 (LL3_01773) xerC 1648743..1649660 (+) 918 WP_013352249.1 tyrosine recombinase XerC -
  LL3_RS08435 (LL3_01774) hslV 1649676..1650221 (+) 546 WP_013352250.1 ATP-dependent protease subunit HslV -
  LL3_RS08440 (LL3_01775) hslU 1650238..1651641 (+) 1404 WP_014470401.1 HslU--HslV peptidase ATPase subunit -
  LL3_RS08445 (LL3_01776) codY 1651679..1652458 (+) 780 WP_013352252.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  LL3_RS08450 (LL3_01777) flgB 1652812..1653201 (+) 390 WP_013352253.1 flagellar basal body rod protein FlgB -
  LL3_RS08455 (LL3_01778) flgC 1653201..1653653 (+) 453 WP_013352254.1 flagellar basal body rod protein FlgC -
  LL3_RS08460 (LL3_01779) fliE 1653664..1653984 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  LL3_RS08465 (LL3_01780) fliF 1654027..1655637 (+) 1611 WP_013352255.1 flagellar basal-body MS-ring/collar protein FliF -
  LL3_RS08470 (LL3_01781) fliG 1655650..1656666 (+) 1017 WP_013352256.1 flagellar motor switch protein FliG -
  LL3_RS08475 (LL3_01782) fliH 1656659..1657414 (+) 756 WP_013352257.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29028.23 Da        Isoelectric Point: 4.6017

>NTDB_id=45246 LL3_RS08445 WP_013352252.1 1651679..1652458(+) (codY) [Bacillus amyloliquefaciens LL3]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=45246 LL3_RS08445 WP_013352252.1 1651679..1652458(+) (codY) [Bacillus amyloliquefaciens LL3]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGTTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTAGGCTACTCTATTA
ATCAGCAGATCGAAAATGACCGCATGAAAAAAATGCTGGAAGACCGCCAGTTCCCGGAAGAGTACACGAAAAATCTGTTC
AACGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGTGAATACACGGCATTTCCTGTTGAAAACAGAGACCTGTTCCA
GGCAGGCTTAACGACGATTGTCCCGATTATCGGCGGAGGCGAGCGTCTGGGCACATTGATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAAGCACGAAGCAAAGCAGTCGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAACTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTGGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCCGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGAACT
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAATCTTAAATCACATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.614

100

0.996
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467

Multiple sequence alignment