Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   I6H98_RS11325 Genome accession   NZ_CP065966
Coordinates   2380048..2380473 (+) Length   141 a.a.
NCBI ID   WP_003094721.1    Uniprot ID   G3XD43
Organism   Pseudomonas aeruginosa strain FDAARGOS_1041     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2375048..2385473
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H98_RS11310 (I6H98_11310) pilX 2375612..2376199 (+) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  I6H98_RS11315 (I6H98_11315) pilY1 2376211..2379702 (+) 3492 WP_003102607.1 type 4a pilus biogenesis protein PilY1 -
  I6H98_RS11320 (I6H98_11320) pilY2 2379704..2380051 (+) 348 WP_003102609.1 type 4a fimbrial biogenesis protein PilY2 -
  I6H98_RS11325 (I6H98_11325) comF 2380048..2380473 (+) 426 WP_003094721.1 type 4a pilus minor pilin PilE Machinery gene
  I6H98_RS11330 (I6H98_11330) ispH 2380520..2381464 (-) 945 WP_003094724.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  I6H98_RS11335 (I6H98_11335) fkpB 2381550..2381990 (-) 441 WP_003102613.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  I6H98_RS11340 (I6H98_11340) lspA 2381983..2382492 (-) 510 WP_003094728.1 signal peptidase II -
  I6H98_RS11345 (I6H98_11345) ileS 2382485..2385316 (-) 2832 WP_003102617.1 isoleucine--tRNA ligase -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15279.30 Da        Isoelectric Point: 10.0198

>NTDB_id=452450 I6H98_RS11325 WP_003094721.1 2380048..2380473(+) (comF) [Pseudomonas aeruginosa strain FDAARGOS_1041]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=452450 I6H98_RS11325 WP_003094721.1 2380048..2380473(+) (comF) [Pseudomonas aeruginosa strain FDAARGOS_1041]
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGTTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGCCAGGCCCTGCTCTCGGACGCGGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTGGCCAAGCTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAATCTCACCATAGCGACGCCCACCAGCACCACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 4NOA

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

42.188

90.78

0.383