Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   JBL37_RS19685 Genome accession   NZ_CP065948
Coordinates   4153421..4153846 (+) Length   141 a.a.
NCBI ID   WP_003094721.1    Uniprot ID   G3XD43
Organism   Pseudomonas aeruginosa strain PAM68     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4148421..4158846
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JBL37_RS19670 (JBL37_19675) pilX 4148985..4149572 (+) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  JBL37_RS19675 (JBL37_19680) pilY1 4149584..4153075 (+) 3492 WP_003102607.1 type 4a pilus biogenesis protein PilY1 -
  JBL37_RS19680 (JBL37_19685) pilY2 4153077..4153424 (+) 348 WP_003102609.1 type 4a fimbrial biogenesis protein PilY2 -
  JBL37_RS19685 (JBL37_19690) comF 4153421..4153846 (+) 426 WP_003094721.1 type 4a pilus minor pilin PilE Machinery gene
  JBL37_RS19690 (JBL37_19695) ispH 4153893..4154837 (-) 945 WP_003094724.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  JBL37_RS19695 (JBL37_19700) fkpB 4154923..4155363 (-) 441 WP_003102613.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  JBL37_RS19700 (JBL37_19705) lspA 4155356..4155865 (-) 510 WP_003102615.1 signal peptidase II -
  JBL37_RS19705 (JBL37_19710) ileS 4155858..4158689 (-) 2832 WP_003102617.1 isoleucine--tRNA ligase -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15279.30 Da        Isoelectric Point: 10.0198

>NTDB_id=452371 JBL37_RS19685 WP_003094721.1 4153421..4153846(+) (comF) [Pseudomonas aeruginosa strain PAM68]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=452371 JBL37_RS19685 WP_003094721.1 4153421..4153846(+) (comF) [Pseudomonas aeruginosa strain PAM68]
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGTTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGGCAGGCGCTGCTCTCGGACGCGGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTGGCCAAGCTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAATCTCACCATAGCGACGCCCACCAGCACCACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 4NOA

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

42.188

90.78

0.383