Detailed information NTG0452325

Bioinformatically predicted

Overview

• Name: recD2
• Type: Machinery gene
• Locus tag: HTY60_RS13570
• Genome accession: NZ_CP054415
• Coordinates: 2625765..2628143 (-)
• Length: 792 a.a.
• NCBI ID: WP_013353018.1
• Uniprot ID: A0A9P1JIN2
• Organism: Bacillus amyloliquefaciens strain 205
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2620765..2633143

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HTY60_RS13535 (HTY60_13535)	-	2621852..2622580 (+)	729	WP_013353013.1	amino acid ABC transporter ATP-binding protein	-
HTY60_RS13540 (HTY60_13540)	-	2622601..2623428 (+)	828	WP_013353014.1	transporter substrate-binding domain-containing protein	-
HTY60_RS13545 (HTY60_13545)	-	2623486..2624130 (+)	645	WP_013353015.1	amino acid ABC transporter permease	-
HTY60_RS13550 (HTY60_13550)	-	2624149..2624805 (+)	657	WP_013353016.1	amino acid ABC transporter permease	-
HTY60_RS13555 (HTY60_13555)	-	2624839..2624970 (-)	132	WP_003152741.1	YrzQ family protein	-
HTY60_RS13560 (HTY60_13560)	-	2624992..2625183 (-)	192	WP_003152738.1	hypothetical protein	-
HTY60_RS13565 (HTY60_13565)	-	2625196..2625654 (-)	459	WP_041481661.1	hypothetical protein	-
HTY60_RS13570 (HTY60_13570)	recD2	2625765..2628143 (-)	2379	WP_013353018.1	ATP-dependent RecD-like DNA helicase	Machinery gene
HTY60_RS13575 (HTY60_13575)	-	2628162..2628812 (-)	651	WP_013353019.1	lipopolysaccharide assembly protein LapB	-
HTY60_RS13580 (HTY60_13580)	mnmA	2628870..2629985 (-)	1116	WP_013353020.1	tRNA 2-thiouridine(34) synthase MnmA	-
HTY60_RS13585 (HTY60_13585)	-	2630022..2631161 (-)	1140	WP_013353021.1	cysteine desulfurase family protein	-
HTY60_RS13590 (HTY60_13590)	cymR	2631180..2631596 (-)	417	WP_013353022.1	cysteine metabolism transcriptional regulator CymR	-
HTY60_RS13595 (HTY60_13595)	-	2631791..2633059 (+)	1269	WP_013353023.1	replication-associated recombination protein A	-

Sequence

Protein

• Length: 792 a.a.
• Molecular weight: 88376.13 Da
• Isoelectric Point: 4.9881

>NTDB_id=452325 HTY60_RS13570 WP_013353018.1 2625765..2628143(-) (recD2) [Bacillus amyloliquefaciens strain 205]
MDQLKIEEQPYVKGVIHTVIYHNDTNLYTVLKVKVAETSEAIEDKVVSVTGYFPLLQEDETYTFYGKTATHPKFGLQFQA
EHFKKEIPTTKEGIIHYLSSDLFEGIGKKTAEEIVKKLGDGALNKILADASVLYDVPKMSKKKADKLAGELQRHQGLEQI
MISLNQYGFGPQLSMKIYQAYETETLEKIQENPYQLVKDVEGIGFVKADELGEKMGLSGNHPERIKAAILYTIESTCLSE
GHTYIDTKQLIINTQTLLNQSADGGRVTEMDAADGIIALGESKDIVIEGDRCYFPSLFYAEQNVAKRVLDIAAQTEYADQ
FPESEFLLALGELEERMKVQYAPSQKDAIQKALSSPMLLLTGGPGTGKTTVIKGIVELYSELHGVSLDPGDYKKDEAFPV
LLAAPTGRAAKRMSESTGLPAVTIHRLLGWNGAEGFTYNEDQPIEGKLIIIDEASMLDIWLASHLFKALPKHIQLIVVGD
EDQLPSVGPGQVLRDLLASEVLPTVRLTDIYRQAEGSSIVELAHDMKKGLLPKGLTAPTKDRSFIRCNSAQIKEVVDQVV
SNALKKGYTSRDIQVLAPMYRGKAGINELNMLLQDIMNPPKEKRRELKFGDVVYRTGDKILQLVNQPENNVFNGDIGEIV
SIFYAKENTEKEDMVVVSFDGNEITFTKKDFSQFTHAYCCSIHKSQGSEFPIVVLPVVKGYYRMLRRNLLYTAITRAKKF
LILCGEEEALEWGVKNNDATVRQTSLKNRLTEQTEEMDAELAALQKELPFSVYDANIGMEGITPFDFMEEKA

Nucleotide

• Length: 2379 bp

>NTDB_id=452325 HTY60_RS13570 WP_013353018.1 2625765..2628143(-) (recD2) [Bacillus amyloliquefaciens strain 205]
GTGGATCAGCTGAAAATCGAGGAACAACCGTATGTAAAAGGCGTTATTCATACGGTCATTTACCACAATGACACCAACCT
GTATACAGTGCTGAAGGTCAAGGTTGCAGAAACGTCTGAGGCGATCGAAGACAAGGTCGTATCCGTAACGGGCTACTTCC
CTCTGCTGCAAGAAGATGAGACTTACACATTTTACGGAAAAACCGCCACACACCCCAAGTTCGGCCTGCAATTCCAGGCT
GAACACTTTAAAAAAGAAATTCCGACCACAAAAGAAGGGATTATTCACTATTTATCAAGCGATCTGTTTGAAGGAATCGG
AAAAAAAACGGCGGAAGAAATCGTCAAAAAGCTTGGAGACGGCGCGCTGAATAAAATTCTGGCTGATGCGTCGGTGCTTT
ACGATGTGCCGAAAATGTCCAAAAAGAAAGCGGATAAGCTTGCCGGAGAGCTGCAGCGGCATCAGGGGCTGGAGCAGATT
ATGATTTCTCTTAACCAATATGGTTTCGGACCTCAGCTTTCCATGAAAATTTATCAGGCTTACGAAACGGAAACCCTTGA
GAAAATTCAGGAGAATCCTTATCAGCTTGTAAAGGACGTGGAAGGCATCGGCTTTGTAAAAGCCGACGAGCTGGGCGAAA
AAATGGGTCTGTCAGGGAACCATCCCGAGCGGATCAAAGCGGCGATCTTATATACGATTGAATCGACCTGCCTTTCAGAA
GGTCATACGTACATAGACACAAAGCAGCTGATTATCAATACGCAAACGCTTCTGAATCAGTCAGCTGACGGAGGCCGGGT
CACGGAAATGGATGCGGCTGACGGCATCATCGCCCTCGGAGAGAGTAAGGACATCGTCATAGAAGGAGACCGCTGCTATT
TTCCGTCTTTGTTTTACGCGGAACAAAATGTCGCAAAACGCGTGCTCGACATTGCGGCTCAGACGGAGTATGCCGATCAA
TTTCCTGAATCGGAATTTCTGCTTGCGCTCGGCGAACTGGAAGAACGGATGAAAGTTCAATACGCTCCGAGTCAAAAGGA
TGCCATTCAAAAAGCGCTGTCTTCGCCGATGCTTTTACTGACCGGAGGACCGGGTACGGGAAAAACGACCGTTATCAAAG
GAATCGTGGAATTATACAGTGAACTCCACGGCGTATCGCTTGATCCCGGTGATTATAAAAAAGACGAGGCGTTTCCGGTG
CTGCTTGCCGCGCCGACCGGAAGAGCCGCAAAACGGATGAGCGAATCTACGGGTCTGCCTGCTGTTACGATTCACAGGCT
GCTCGGCTGGAATGGCGCTGAAGGCTTTACCTACAATGAAGATCAGCCGATTGAAGGGAAACTGATCATTATAGACGAAG
CGAGTATGCTCGATATTTGGCTCGCCAGCCATTTGTTTAAGGCGCTCCCTAAGCACATCCAGCTCATCGTCGTGGGTGAT
GAAGACCAGCTTCCTTCCGTGGGGCCGGGGCAGGTGCTGAGAGACCTTTTGGCTTCTGAGGTGCTGCCGACCGTGCGTCT
GACAGATATTTACCGTCAGGCGGAAGGGTCATCCATCGTCGAACTTGCCCATGATATGAAAAAAGGGCTGCTTCCAAAAG
GACTGACCGCGCCGACAAAAGACCGCTCATTTATCCGCTGTAATTCTGCACAGATTAAAGAAGTCGTCGATCAAGTCGTT
TCAAACGCGTTAAAGAAGGGATATACCTCCAGAGATATTCAAGTGCTTGCGCCGATGTACAGGGGAAAAGCGGGAATTAA
CGAGCTGAATATGCTTCTTCAAGACATCATGAATCCGCCGAAAGAAAAAAGGCGGGAGCTGAAATTCGGAGATGTCGTCT
ACAGGACGGGCGATAAAATATTGCAGCTTGTCAACCAGCCGGAAAACAATGTGTTTAACGGTGATATCGGCGAAATCGTG
TCCATTTTTTATGCCAAAGAAAATACGGAAAAAGAAGACATGGTCGTCGTCTCGTTTGACGGCAATGAAATCACCTTTAC
GAAAAAGGATTTCAGCCAGTTTACCCATGCTTACTGCTGTTCCATCCACAAGTCTCAGGGAAGTGAATTTCCGATTGTCG
TCCTGCCTGTTGTCAAAGGCTACTATCGAATGCTTAGGAGAAATCTCCTTTATACCGCCATTACAAGGGCCAAGAAATTT
CTGATCCTTTGCGGAGAAGAAGAAGCGCTTGAATGGGGCGTCAAAAACAATGATGCCACCGTCAGACAGACGTCGCTTAA
AAACAGGCTCACAGAGCAGACTGAAGAGATGGATGCAGAACTGGCCGCTCTGCAAAAAGAACTGCCGTTCAGTGTATATG
ATGCGAATATCGGAATGGAAGGCATTACGCCGTTTGACTTTATGGAAGAAAAAGCGTAA

Domains

Predicted by InterproScan.

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (589-659)

• AAA domain (AAA_30) (341-548)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (676-724)

• Helix-hairpin-helix containing domain (HHH_RecD2) (154-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD2	Bacillus subtilis subsp. subtilis str. 168	88.748	99.874	0.886