Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   HTY60_RS09135 Genome accession   NZ_CP054415
Coordinates   1716180..1716959 (+) Length   259 a.a.
NCBI ID   WP_151282452.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain 205     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1711180..1721959
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HTY60_RS09115 (HTY60_09115) trmFO 1711867..1713174 (+) 1308 WP_013352248.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  HTY60_RS09120 (HTY60_09120) xerC 1713244..1714161 (+) 918 WP_013352249.1 tyrosine recombinase XerC -
  HTY60_RS09125 (HTY60_09125) hslV 1714177..1714722 (+) 546 WP_013352250.1 ATP-dependent protease subunit HslV -
  HTY60_RS09130 (HTY60_09130) hslU 1714730..1716142 (+) 1413 WP_258565086.1 HslU--HslV peptidase ATPase subunit -
  HTY60_RS09135 (HTY60_09135) codY 1716180..1716959 (+) 780 WP_151282452.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  HTY60_RS09140 (HTY60_09140) flgB 1717313..1717702 (+) 390 WP_013352253.1 flagellar basal body rod protein FlgB -
  HTY60_RS09145 (HTY60_09145) flgC 1717702..1718154 (+) 453 WP_013352254.1 flagellar basal body rod protein FlgC -
  HTY60_RS09150 (HTY60_09150) fliE 1718165..1718485 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  HTY60_RS09155 (HTY60_09155) fliF 1718528..1720138 (+) 1611 WP_013352255.1 flagellar basal-body MS-ring/collar protein FliF -
  HTY60_RS09160 (HTY60_09160) fliG 1720151..1721167 (+) 1017 WP_013352256.1 flagellar motor switch protein FliG -
  HTY60_RS09165 (HTY60_09165) fliH 1721160..1721915 (+) 756 WP_013352257.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29000.18 Da        Isoelectric Point: 4.6017

>NTDB_id=452306 HTY60_RS09135 WP_151282452.1 1716180..1716959(+) (codY) [Bacillus amyloliquefaciens strain 205]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVAGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=452306 HTY60_RS09135 WP_151282452.1 1716180..1716959(+) (codY) [Bacillus amyloliquefaciens strain 205]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTAGGCTACTCTATTA
ATCAGCAGATCGAAAATGACCGCATGAAAAAAATGCTGGAAGACCGCCAGTTCCCGGAAGAGTACACGAAAAATCTGTTC
AACGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCATTTCCTGTTGAAAACAGAGACCTGTTCCA
GGCAGGCTTAACGACGATTGTTCCGATTATCGGCGGAGGCGAGCGTCTGGGCACATTGATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGCAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAAGCGCGAAGCAAAGCAGTCGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAACTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTGGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCCGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACT
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAGTTGGAAAATCTTAAATCACATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467