Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   JBL36_RS15155 Genome accession   NZ_CP065947
Coordinates   3245623..3246048 (-) Length   141 a.a.
NCBI ID   WP_003094721.1    Uniprot ID   G3XD43
Organism   Pseudomonas aeruginosa strain PAS6     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3240623..3251048
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JBL36_RS15135 (JBL36_15135) ileS 3240780..3243611 (+) 2832 WP_003102617.1 isoleucine--tRNA ligase -
  JBL36_RS15140 (JBL36_15140) lspA 3243604..3244113 (+) 510 WP_003102615.1 signal peptidase II -
  JBL36_RS15145 (JBL36_15145) fkpB 3244106..3244546 (+) 441 WP_003102613.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  JBL36_RS15150 (JBL36_15150) ispH 3244632..3245576 (+) 945 WP_003094724.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  JBL36_RS15155 (JBL36_15155) comF 3245623..3246048 (-) 426 WP_003094721.1 type 4a pilus minor pilin PilE Machinery gene
  JBL36_RS15160 (JBL36_15160) pilY2 3246045..3246392 (-) 348 WP_003102609.1 type 4a fimbrial biogenesis protein PilY2 -
  JBL36_RS15165 (JBL36_15165) pilY1 3246394..3249885 (-) 3492 WP_003102607.1 type 4a pilus biogenesis protein PilY1 -
  JBL36_RS15170 (JBL36_15170) pilX 3249897..3250484 (-) 588 WP_003112826.1 type 4a pilus minor pilin PilX -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15279.30 Da        Isoelectric Point: 10.0198

>NTDB_id=452270 JBL36_RS15155 WP_003094721.1 3245623..3246048(-) (comF) [Pseudomonas aeruginosa strain PAS6]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=452270 JBL36_RS15155 WP_003094721.1 3245623..3246048(-) (comF) [Pseudomonas aeruginosa strain PAS6]
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGTTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGGCAGGCGCTGCTCTCGGACGCGGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTGGCCAAGCTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAATCTCACCATAGCGACGCCCACCAGCACCACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 4NOA

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

42.188

90.78

0.383