Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   JAN99_RS08100 Genome accession   NZ_CP065927
Coordinates   1656316..1657584 (+) Length   422 a.a.
NCBI ID   WP_111693427.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain emm9ST603     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1651316..1662584
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JAN99_RS08075 (JAN99_08070) - 1651483..1652232 (-) 750 WP_136116187.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  JAN99_RS08080 (JAN99_08075) prmA 1652232..1653185 (-) 954 WP_136116189.1 50S ribosomal protein L11 methyltransferase -
  JAN99_RS08085 (JAN99_08080) - 1653256..1653726 (-) 471 WP_002987990.1 DUF3013 family protein -
  JAN99_RS08090 (JAN99_08085) pabB 1653927..1655684 (+) 1758 WP_111693425.1 aminodeoxychorismate synthase component I -
  JAN99_RS08095 (JAN99_08090) - 1655717..1656283 (+) 567 WP_010922701.1 aminodeoxychorismate/anthranilate synthase component II -
  JAN99_RS08100 (JAN99_08095) rarA 1656316..1657584 (+) 1269 WP_111693427.1 replication-associated recombination protein A Machinery gene
  JAN99_RS08115 (JAN99_08110) msr(I) 1658158..1659615 (-) 1458 WP_198462967.1 ABC-F type ribosomal protection protein Msr(I) -
  JAN99_RS08120 (JAN99_08115) - 1659729..1660922 (-) 1194 WP_198462968.1 macrolide efflux MFS transporter Mef(J) -
  JAN99_RS08125 (JAN99_08120) - 1661262..1661381 (-) 120 WP_198462969.1 antitoxin -
  JAN99_RS08130 (JAN99_08125) - 1661407..1662534 (-) 1128 WP_198462970.1 site-specific integrase -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46645.07 Da        Isoelectric Point: 6.3774

>NTDB_id=452060 JAN99_RS08100 WP_111693427.1 1656316..1657584(+) (rarA) [Streptococcus pyogenes strain emm9ST603]
MPDHLALRMRPKTISEVIGQKHLVGEGKIIRRMVEANRLSSMILYGPPGIGKTSIASAIAGTTRYAFRTFNATIDSKKRL
QEITEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLENGTIIMIGATTENPFFSVTPAIRSRVQIFELEPLSNEDIKTAIQ
LAISDKERGFPFLVTIDDEALDFIVTATNGDLRSAYNSLDLAVMSTSPNEDGSRHISLETMENSLQRSYITMDKNGDGHY
DVLSALQKSIRGSDVNASLHYAARLVEAGDLPSLARRLTIIAYEDIGLANPDAQVHTVTALDAAQRIGFPEARILIANVV
IDLALSPKSNSAYLAMDAALADLRTSGNLPIPRHLRDGHYAGSKDLGNAKDYLYPHAYPEKWVKQQYLPDKLVGHHYFEA
NETGKYERALGSNKERIDKLSD

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=452060 JAN99_RS08100 WP_111693427.1 1656316..1657584(+) (rarA) [Streptococcus pyogenes strain emm9ST603]
ATGCCTGATCATTTAGCGCTCAGAATGCGCCCCAAAACCATTTCAGAGGTCATCGGACAAAAACACCTTGTTGGCGAAGG
CAAAATCATCCGTCGCATGGTGGAAGCAAATAGACTATCGTCCATGATCCTCTATGGCCCTCCAGGAATCGGTAAAACTT
CCATTGCTTCTGCTATTGCTGGTACTACTAGATATGCCTTTCGGACCTTTAATGCCACCATTGACAGCAAAAAACGTCTC
CAAGAAATTACGGAAGAAGCTAAATTTTCTGGTGGCTTGGTATTATTACTAGACGAGATTCATCGCCTTGATAAGACAAA
ACAAGATTTTCTTTTACCTTTACTTGAGAATGGCACCATTATCATGATTGGCGCAACCACTGAGAACCCCTTCTTTTCAG
TGACACCCGCTATCAGAAGCAGGGTCCAGATTTTTGAATTGGAACCACTTTCTAACGAGGATATTAAAACAGCCATTCAG
CTAGCAATTTCCGACAAAGAACGGGGATTTCCTTTTTTAGTGACAATTGATGATGAGGCGCTAGATTTCATTGTTACCGC
CACAAATGGAGACCTACGATCTGCTTATAATTCCTTGGATCTAGCAGTCATGTCTACTTCTCCTAATGAAGATGGTAGCC
GTCATATTAGTCTAGAGACAATGGAAAATAGTCTGCAGCGTAGTTATATTACCATGGATAAAAACGGGGACGGGCATTAT
GATGTTTTATCTGCCTTACAAAAATCCATTAGAGGTTCTGATGTCAATGCTAGCCTGCACTACGCCGCTCGTTTAGTAGA
AGCTGGAGACTTGCCTAGTTTAGCAAGACGATTGACCATTATTGCTTACGAAGATATTGGCTTAGCCAACCCTGACGCCC
AAGTTCATACCGTCACCGCACTAGATGCCGCTCAACGCATTGGTTTTCCAGAAGCTCGTATTCTTATCGCTAACGTGGTC
ATTGATTTGGCTCTATCACCTAAATCCAATTCAGCTTATTTAGCTATGGATGCAGCTTTAGCTGATTTGAGAACATCAGG
TAACCTCCCCATTCCAAGGCATCTTAGAGACGGGCATTATGCTGGCAGCAAGGACCTAGGCAATGCCAAAGATTACCTCT
ACCCACACGCCTACCCTGAAAAATGGGTCAAACAACAATACCTACCAGATAAATTAGTAGGACATCATTATTTTGAAGCC
AATGAAACCGGTAAATACGAACGCGCACTTGGTTCAAATAAAGAGCGTATTGATAAGCTCTCAGACTGA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-415)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)

AAA C-terminal domain (AAA_assoc_2)

(174-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

59.712

98.815

0.59