Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   I9X29_RS02495 Genome accession   NZ_CP065867
Coordinates   543781..544506 (-) Length   241 a.a.
NCBI ID   WP_073647009.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain TJ2014-049     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 538781..549506
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I9X29_RS02470 (I9X29_02470) - 539254..539769 (+) 516 WP_003084789.1 glycine cleavage system protein R -
  I9X29_RS02475 (I9X29_02475) rarD 540458..541354 (-) 897 WP_003103301.1 EamA family transporter RarD -
  I9X29_RS02480 (I9X29_02480) - 541557..542531 (-) 975 WP_023107657.1 serine/threonine protein kinase -
  I9X29_RS02485 (I9X29_02485) - 542593..543351 (-) 759 WP_198341119.1 TOBE domain-containing protein -
  I9X29_RS02490 (I9X29_02490) - 543419..543739 (-) 321 WP_003129064.1 YfiM family lipoprotein -
  I9X29_RS02495 (I9X29_02495) comF 543781..544506 (-) 726 WP_073647009.1 ComF family protein Machinery gene
  I9X29_RS02500 (I9X29_02500) - 544645..544938 (-) 294 WP_003084806.1 hypothetical protein -
  I9X29_RS02505 (I9X29_02505) - 544992..545918 (-) 927 WP_023435400.1 LysR family transcriptional regulator -
  I9X29_RS02510 (I9X29_02510) - 546036..546794 (+) 759 WP_031639709.1 5-oxoprolinase subunit PxpA -
  I9X29_RS02515 (I9X29_02515) - 546871..547119 (+) 249 WP_003084813.1 acetyl-CoA carboxylase -
  I9X29_RS02520 (I9X29_02520) - 547130..548506 (+) 1377 WP_198341120.1 acetyl-CoA carboxylase biotin carboxylase subunit -
  I9X29_RS02525 (I9X29_02525) - 548508..549386 (+) 879 WP_023081616.1 5-oxoprolinase subunit B family protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27120.66 Da        Isoelectric Point: 11.0261

>NTDB_id=451892 I9X29_RS02495 WP_073647009.1 543781..544506(-) (comF) [Pseudomonas aeruginosa strain TJ2014-049]
MSFPLRPLTRWLLPPPACLLCAARSDQPPRPLCRACAADLPWSRQQCRRCALPLPLDGQVCGECLRRPPAYEQAIAPWRY
AFPLDSLINRFKHQAAWPLGRLLGELLAEHLRQRYTEGLPRPARLLPVPLAPRRERRRGFNQAQQLAERLAGELDLRCDP
HSLRRVLDTPAQQGLDARVRRRNLRHAFALAPASDVRGLHLALVDDVLTTGATAECLSRLLRRAGAARVDVYCLARTPKP
G

Nucleotide


Download         Length: 726 bp        

>NTDB_id=451892 I9X29_RS02495 WP_073647009.1 543781..544506(-) (comF) [Pseudomonas aeruginosa strain TJ2014-049]
ATGTCGTTCCCGCTTCGTCCTCTCACGCGCTGGCTTTTGCCGCCGCCGGCCTGCCTGCTCTGCGCCGCCCGCAGCGACCA
GCCGCCCCGCCCGCTGTGCCGCGCCTGTGCCGCCGACCTGCCCTGGTCGCGCCAGCAGTGCCGGCGCTGTGCCCTGCCCC
TGCCGCTGGACGGCCAGGTGTGCGGCGAGTGCCTGCGCCGCCCGCCGGCCTATGAACAGGCGATCGCGCCCTGGCGCTAC
GCCTTTCCGCTCGACAGTCTGATCAACCGCTTCAAGCACCAGGCGGCCTGGCCATTGGGGCGGCTGCTCGGCGAGCTGCT
GGCGGAACACCTGCGGCAACGCTACACCGAAGGCCTGCCGCGCCCGGCACGCCTGCTGCCGGTCCCGCTGGCGCCACGGC
GCGAACGTCGTCGCGGCTTCAACCAGGCGCAACAGCTCGCCGAGCGACTGGCTGGCGAGCTGGACCTGCGCTGCGATCCG
CACAGCCTGCGGCGAGTGCTGGATACTCCGGCCCAGCAGGGCCTGGACGCGAGGGTGCGGCGGCGCAACCTGCGCCACGC
CTTCGCCCTGGCGCCCGCCAGCGATGTTCGCGGGCTGCACCTGGCACTGGTGGACGACGTGCTCACCACCGGGGCCACCG
CCGAGTGCCTTTCCCGCCTGTTGCGCCGGGCGGGCGCCGCGCGGGTCGACGTCTACTGCCTGGCGCGCACGCCGAAGCCC
GGCTGA

Domains

Predicted by InterProScan.

Phosphoribosyl transferase domain (Pribosyltran)

(141-238)

Double zinc ribbon domain (DZR_2)

(9-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

38.174

100

0.382