Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   I9X26_RS30865 Genome accession   NZ_CP065865
Coordinates   6506714..6507310 (-) Length   198 a.a.
NCBI ID   WP_003095839.1    Uniprot ID   G3XD30
Organism   Pseudomonas aeruginosa strain TJ2019-022     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6501714..6512310
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I9X26_RS30845 (I9X26_30845) aroK 6502845..6503363 (-) 519 WP_003095833.1 shikimate kinase AroK -
  I9X26_RS30850 (I9X26_30850) pilQ 6503375..6505519 (-) 2145 WP_003103267.1 type 4a pilus secretin PilQ Machinery gene
  I9X26_RS30855 (I9X26_30855) comL/pilP 6505573..6506097 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  I9X26_RS30860 (I9X26_30860) pilO 6506094..6506717 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  I9X26_RS30865 (I9X26_30865) pilN 6506714..6507310 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  I9X26_RS30870 (I9X26_30870) pilM 6507310..6508374 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  I9X26_RS30875 (I9X26_30875) - 6508559..6511030 (+) 2472 WP_004352493.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22213.55 Da        Isoelectric Point: 10.0895

>NTDB_id=451761 I9X26_RS30865 WP_003095839.1 6506714..6507310(-) (pilN) [Pseudomonas aeruginosa strain TJ2019-022]
MARINLLPWREELREQRKQQFLVILGGVLVASAALVFLGDQYFTAAIENQNARNDFLRKEIVVLDARIKEISELKSRRQQ
LLERMKIIQDLQGNRPIIGRVFDQLVRTLPDGVYFTDLKMTGKNIAIAGAAESNNRVSNLMRNMDASEWLTAPTLNEVKA
VTQGAVDQANVFQLTVQQTQPGEEDAKAKHGVAQGAKK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=451761 I9X26_RS30865 WP_003095839.1 6506714..6507310(-) (pilN) [Pseudomonas aeruginosa strain TJ2019-022]
ATGGCACGGATCAACCTTCTACCCTGGCGCGAAGAGCTGCGCGAGCAGCGCAAGCAGCAGTTCCTGGTGATTCTTGGCGG
CGTCCTGGTGGCATCGGCTGCGCTGGTATTCCTTGGCGACCAGTACTTCACCGCGGCCATCGAGAACCAGAACGCCCGCA
ACGACTTCCTGCGCAAGGAAATCGTCGTACTCGACGCCCGGATCAAGGAAATCAGCGAACTGAAGTCGCGGCGCCAGCAA
TTGCTCGAGCGGATGAAGATCATCCAGGACCTGCAGGGCAACCGTCCCATCATCGGACGGGTGTTCGACCAGCTCGTGCG
GACCTTGCCCGACGGCGTGTATTTCACCGACCTGAAGATGACCGGCAAGAACATCGCCATCGCCGGCGCGGCCGAGTCCA
ACAACCGCGTTTCCAATCTCATGCGCAACATGGACGCGTCCGAGTGGTTGACCGCCCCGACCCTGAACGAGGTCAAGGCG
GTGACCCAGGGCGCGGTGGACCAGGCCAACGTGTTCCAACTGACCGTGCAGCAGACGCAGCCCGGCGAGGAAGACGCCAA
GGCGAAGCATGGGGTTGCGCAAGGAGCCAAGAAATGA

Domains

Predicted by InterProScan.

Fimbrial assembly protein (PilN) (PilN)

(100-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5EOU

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Legionella pneumophila strain ERS1305867

41.714

88.384

0.369