Detailed information NTG0045165

Bioinformatically predicted

Overview

• Name: codY
• Type: Regulator
• Locus tag: BAMTA208_RS08780
• Genome accession: NC_017188
• Coordinates: 1790313..1791092 (-)
• Length: 259 a.a.
• NCBI ID: WP_013352252.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens TA208
• Function: repression of comK (predicted from homology) Competence regulation

Genomic Context

Location: 1785313..1796092

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BAMTA208_RS08750 (BAMTA208_09030)	fliH	1785358..1786113 (-)	756	WP_013352257.1	flagellar assembly protein FliH	-
BAMTA208_RS08755 (BAMTA208_09035)	fliG	1786106..1787122 (-)	1017	WP_013352256.1	flagellar motor switch protein FliG	-
BAMTA208_RS08760 (BAMTA208_09040)	fliF	1787135..1788745 (-)	1611	WP_013352255.1	flagellar basal-body MS-ring/collar protein FliF	-
BAMTA208_RS08765 (BAMTA208_09045)	fliE	1788788..1789108 (-)	321	WP_007409777.1	flagellar hook-basal body complex protein FliE	-
BAMTA208_RS08770 (BAMTA208_09050)	flgC	1789119..1789571 (-)	453	WP_013352254.1	flagellar basal body rod protein FlgC	-
BAMTA208_RS08775	flgB	1789571..1789959 (-)	389	Protein_1737	flagellar basal body rod protein FlgB	-
BAMTA208_RS08780 (BAMTA208_09065)	codY	1790313..1791092 (-)	780	WP_013352252.1	GTP-sensing pleiotropic transcriptional regulator CodY	Regulator
BAMTA208_RS08785 (BAMTA208_09070)	hslU	1791130..1792533 (-)	1404	WP_014470401.1	HslU--HslV peptidase ATPase subunit	-
BAMTA208_RS08790 (BAMTA208_09075)	hslV	1792550..1793095 (-)	546	WP_013352250.1	ATP-dependent protease subunit HslV	-
BAMTA208_RS08795 (BAMTA208_09080)	xerC	1793111..1794028 (-)	918	WP_013352249.1	tyrosine recombinase XerC	-
BAMTA208_RS08800 (BAMTA208_09085)	trmFO	1794098..1795405 (-)	1308	WP_013352248.1	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	-

Sequence

Protein

• Length: 259 a.a.
• Molecular weight: 29028.23 Da
• Isoelectric Point: 4.6017

>NTDB_id=45165 BAMTA208_RS08780 WP_013352252.1 1790313..1791092(-) (codY) [Bacillus amyloliquefaciens TA208]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide

• Length: 780 bp

>NTDB_id=45165 BAMTA208_RS08780 WP_013352252.1 1790313..1791092(-) (codY) [Bacillus amyloliquefaciens TA208]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGTTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTAGGCTACTCTATTA
ATCAGCAGATCGAAAATGACCGCATGAAAAAAATGCTGGAAGACCGCCAGTTCCCGGAAGAGTACACGAAAAATCTGTTC
AACGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGTGAATACACGGCATTTCCTGTTGAAAACAGAGACCTGTTCCA
GGCAGGCTTAACGACGATTGTCCCGATTATCGGCGGAGGCGAGCGTCTGGGCACATTGATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAAGCACGAAGCAAAGCAGTCGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAACTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTGGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCCGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGAACT
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAATCTTAAATCACATTAA

Domains

Predicted by InterproScan.

• CodY GAF-like domain (CodY) (3-178)

• CodY helix-turn-helix domain (HTH_CodY) (198-255)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
codY	Bacillus subtilis subsp. subtilis str. 168	99.614	100	0.996
codY	Lactococcus lactis subsp. lactis strain DGCC12653	47.451	98.456	0.467