Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   I1A60_RS08280 Genome accession   NZ_CP065857
Coordinates   1708687..1709961 (+) Length   424 a.a.
NCBI ID   WP_000102740.1    Uniprot ID   -
Organism   Staphylococcus aureus strain CC1153-MRSA     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1703687..1714961
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I1A60_RS08250 (I1A60_08250) mnmA 1703889..1705007 (-) 1119 WP_000066097.1 tRNA 2-thiouridine(34) synthase MnmA -
  I1A60_RS08255 (I1A60_08255) - 1705008..1706150 (-) 1143 WP_072468114.1 cysteine desulfurase family protein -
  I1A60_RS08260 (I1A60_08260) - 1706462..1707475 (+) 1014 WP_151359688.1 LLM class flavin-dependent oxidoreductase -
  I1A60_RS08265 (I1A60_08265) - 1707712..1707858 (-) 147 WP_072468113.1 SAS049 family protein -
  I1A60_RS08270 (I1A60_08270) - 1707898..1708080 (-) 183 WP_000752909.1 CsbD family protein -
  I1A60_RS08275 (I1A60_08275) cymR 1708180..1708602 (-) 423 WP_000704122.1 cysteine metabolism transcriptional regulator CymR -
  I1A60_RS08280 (I1A60_08280) rarA 1708687..1709961 (+) 1275 WP_000102740.1 replication-associated recombination protein A Machinery gene
  I1A60_RS08285 (I1A60_08285) - 1710122..1710895 (-) 774 WP_000682646.1 tRNA threonylcarbamoyladenosine dehydratase -
  I1A60_RS08290 (I1A60_08290) - 1710895..1711023 (-) 129 WP_001808039.1 hypothetical protein -
  I1A60_RS08300 (I1A60_08300) aspS 1711356..1713122 (-) 1767 WP_072468112.1 aspartate--tRNA ligase -
  I1A60_RS08305 (I1A60_08305) hisS 1713138..1714400 (-) 1263 WP_000590826.1 histidine--tRNA ligase -

Sequence

Protein


Download         Length: 424 a.a.        Molecular weight: 47264.84 Da        Isoelectric Point: 8.3539

>NTDB_id=451649 I1A60_RS08280 WP_000102740.1 1708687..1709961(+) (rarA) [Staphylococcus aureus strain CC1153-MRSA]
MSTEPLASRMRPKNIDEIISQQHLVGPRGIIRRMVDTKKLTSMIFYGPPGIGKTSIAKAISGSTQYKFRQLNAVTNTKKD
MQLVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGKIVLIGATTSNPYHAINPAIRSRAQIFELYPLNDEDVRQAL
TRAIEDEENGLKTYQPKIDEDAMTYFSTQSQGDVRSALNALELAVLSADNDKDGYRHVTLQDAKDCLQKGAFVSDKDGDM
HYDVMSAFQKSIRGSDVNAALHYLARLIEAGDLPTIVRRLLVISYEDIGLASPNAGQRTLAAIESAERLGLPEARIPLSQ
AVIELCLSPKSNSAMSAIDSALSDIRNGHVGQIPNHLKDGHYQGAKDLGRSIGYKYPHQYVNGYVSQQYLPDKLKNKIYY
EPKTTSKSEQQLKEIYNNLLKQRP

Nucleotide


Download         Length: 1275 bp        

>NTDB_id=451649 I1A60_RS08280 WP_000102740.1 1708687..1709961(+) (rarA) [Staphylococcus aureus strain CC1153-MRSA]
GTGAGTACAGAACCATTAGCATCGAGAATGCGCCCAAAAAATATAGATGAAATCATTTCCCAACAACATTTAGTTGGACC
AAGAGGCATTATCAGAAGAATGGTTGATACAAAAAAATTAACTTCAATGATTTTTTATGGTCCACCTGGTATAGGCAAAA
CAAGTATTGCCAAAGCAATTTCGGGCAGTACGCAATATAAATTCAGACAATTGAATGCTGTAACTAACACTAAAAAAGAT
ATGCAACTTGTTGTTGAAGAAGCTAAAATGTCTGGTCAAGTTATCTTGTTATTAGATGAAATACATCGACTAGATAAAGC
TAAACAAGACTTTTTATTACCTCATTTAGAAAATGGCAAAATCGTCTTGATCGGTGCTACAACTTCAAATCCTTATCATG
CTATCAATCCAGCGATTCGTTCAAGAGCGCAAATTTTTGAGTTATATCCTTTAAATGATGAAGATGTGCGCCAAGCGTTA
ACTCGTGCAATAGAAGATGAAGAGAATGGTTTGAAAACATATCAACCCAAAATTGATGAAGATGCCATGACCTACTTTTC
TACACAAAGTCAAGGTGATGTTCGTAGTGCGTTAAATGCATTGGAATTAGCTGTATTAAGCGCAGATAATGACAAAGACG
GTTATCGACATGTTACATTGCAAGATGCTAAAGACTGTTTACAAAAAGGTGCATTTGTAAGTGATAAGGATGGTGACATG
CATTACGATGTTATGAGCGCTTTCCAAAAATCTATCCGTGGTAGCGACGTCAATGCCGCTTTACATTATTTAGCACGATT
AATTGAAGCTGGAGATTTACCTACAATAGTTCGACGATTACTTGTAATTAGCTATGAGGATATAGGCTTAGCCTCACCTA
ATGCTGGTCAGAGAACACTTGCTGCTATTGAATCAGCAGAACGTCTAGGTTTACCAGAAGCTAGAATTCCACTAAGCCAA
GCAGTAATCGAACTATGCTTATCACCTAAGTCAAATTCAGCAATGAGTGCCATTGATAGTGCATTGTCCGATATTAGAAA
CGGTCATGTGGGCCAAATTCCAAACCATTTAAAAGATGGACATTATCAAGGTGCTAAAGATCTAGGCCGATCTATTGGTT
ACAAATATCCACACCAATATGTTAATGGCTATGTTTCACAGCAATATTTACCTGATAAACTTAAAAACAAAATTTATTAT
GAACCAAAAACGACATCTAAAAGTGAACAACAACTTAAAGAAATATATAACAACTTACTTAAACAAAGGCCGTAA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(254-418)

ATPase family associated with various cellular activities (AAA) (AAA)

(43-145)

AAA C-terminal domain (AAA_assoc_2)

(175-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

69.286

99.057

0.686