Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   I1A60_RS06000 Genome accession   NZ_CP065857
Coordinates   1244773..1245546 (+) Length   257 a.a.
NCBI ID   WP_000055337.1    Uniprot ID   P63843
Organism   Staphylococcus aureus strain CC1153-MRSA     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1239773..1250546
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I1A60_RS05980 (I1A60_05980) trmFO 1240117..1241424 (+) 1308 WP_000195259.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  I1A60_RS05985 (I1A60_05985) xerC 1241841..1242737 (+) 897 WP_001015597.1 tyrosine recombinase XerC -
  I1A60_RS05990 (I1A60_05990) hslV 1242734..1243279 (+) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  I1A60_RS05995 (I1A60_05995) hslU 1243345..1244748 (+) 1404 WP_000379054.1 ATP-dependent protease ATPase subunit HslU -
  I1A60_RS06000 (I1A60_06000) codY 1244773..1245546 (+) 774 WP_000055337.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  I1A60_RS06005 (I1A60_06005) - 1245597..1245689 (+) 93 WP_031788481.1 hypothetical protein -
  I1A60_RS06010 (I1A60_06010) rpsB 1245888..1246655 (+) 768 WP_000268484.1 30S ribosomal protein S2 -
  I1A60_RS06015 (I1A60_06015) - 1246689..1246802 (+) 114 WP_001789890.1 hypothetical protein -
  I1A60_RS06020 (I1A60_06020) tsf 1246837..1247718 (+) 882 WP_072468195.1 translation elongation factor Ts -
  I1A60_RS06025 (I1A60_06025) pyrH 1247855..1248577 (+) 723 WP_000057330.1 UMP kinase -
  I1A60_RS06030 (I1A60_06030) frr 1248596..1249150 (+) 555 WP_001280006.1 ribosome recycling factor -
  I1A60_RS06035 (I1A60_06035) - 1249523..1250293 (+) 771 WP_000473705.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=451625 I1A60_RS06000 WP_000055337.1 1244773..1245546(+) (codY) [Staphylococcus aureus strain CC1153-MRSA]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=451625 I1A60_RS06000 WP_000055337.1 1244773..1245546(+) (codY) [Staphylococcus aureus strain CC1153-MRSA]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGGTCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCAAT
TGAACATATCTTTGAAGAACTAGGCGGTACGGAAGGTCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAATAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428