Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   IAU57_RS02575 Genome accession   NZ_CP065848
Coordinates   562856..563581 (-) Length   241 a.a.
NCBI ID   WP_031690175.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain CMC-097     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 557856..568581
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IAU57_RS02550 (IAU57_02550) - 558328..558843 (+) 516 WP_003084789.1 glycine cleavage system protein R -
  IAU57_RS02555 (IAU57_02555) rarD 559533..560429 (-) 897 WP_003121788.1 EamA family transporter RarD -
  IAU57_RS02560 (IAU57_02560) - 560632..561606 (-) 975 WP_003084794.1 serine/threonine protein kinase -
  IAU57_RS02565 (IAU57_02565) - 561668..562426 (-) 759 WP_003103305.1 TOBE domain-containing protein -
  IAU57_RS02570 (IAU57_02570) - 562494..562814 (-) 321 WP_003103307.1 YfiM family lipoprotein -
  IAU57_RS02575 (IAU57_02575) comF 562856..563581 (-) 726 WP_031690175.1 ComF family protein Machinery gene
  IAU57_RS02580 (IAU57_02580) - 563720..564013 (-) 294 WP_003084806.1 hypothetical protein -
  IAU57_RS02585 (IAU57_02585) - 564067..564993 (-) 927 WP_003118849.1 LysR family transcriptional regulator -
  IAU57_RS02590 (IAU57_02590) - 565111..565869 (+) 759 WP_003103315.1 5-oxoprolinase subunit PxpA -
  IAU57_RS02595 (IAU57_02595) - 565946..566194 (+) 249 WP_003084813.1 acetyl-CoA carboxylase -
  IAU57_RS02600 (IAU57_02600) - 566205..567581 (+) 1377 WP_016852389.1 acetyl-CoA carboxylase biotin carboxylase subunit -
  IAU57_RS02605 (IAU57_02605) - 567583..568461 (+) 879 WP_023081616.1 allophanate hydrolase subunit 1 -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27035.55 Da        Isoelectric Point: 10.8040

>NTDB_id=451496 IAU57_RS02575 WP_031690175.1 562856..563581(-) (comF) [Pseudomonas aeruginosa strain CMC-097]
MSFPLRPLTRWLLPPPACLLCAARSDQPPRPLCRACAADLPWSRQQCRRCALPLPLDGQVCGECLRRPPAYEQAIAPWRY
AFPLDSLINRFKHQAAWPLGRLLGELLAEHLRQRYAEGLPRPARLLPVPLAPRRERRRGFNQAQQLAERLAGELDLRCDP
HSLRRVLDTPAQQGLDATVRRRNLRHAFALAPASDVRGLHLALVDDVLTTGATAERLSRLLCRAGAARVDVYCLARTPKP
G

Nucleotide


Download         Length: 726 bp        

>NTDB_id=451496 IAU57_RS02575 WP_031690175.1 562856..563581(-) (comF) [Pseudomonas aeruginosa strain CMC-097]
ATGTCGTTCCCGCTTCGTCCTCTCACGCGCTGGCTTTTGCCGCCGCCGGCCTGCCTGCTCTGCGCCGCCCGCAGCGACCA
GCCGCCCCGCCCGCTGTGCCGCGCCTGTGCCGCCGACCTGCCCTGGTCGCGCCAGCAGTGCCGGCGCTGCGCCCTGCCCC
TGCCGCTGGACGGCCAGGTGTGCGGCGAGTGCCTGCGCCGCCCGCCGGCCTATGAACAGGCGATCGCGCCCTGGCGCTAC
GCCTTTCCGCTCGACAGCCTGATCAACCGCTTCAAGCACCAGGCGGCCTGGCCGCTGGGGCGGCTGCTCGGCGAGTTGCT
GGCGGAACACCTGCGGCAACGCTACGCCGAAGGCCTGCCGCGCCCGGCACGCCTGCTGCCGGTCCCGCTGGCGCCTCGGC
GCGAACGTCGTCGCGGCTTCAACCAGGCGCAACAGCTCGCCGAGCGACTGGCTGGCGAGCTGGACCTGCGCTGCGATCCG
CACAGCCTGCGGCGAGTGCTGGATACTCCGGCCCAGCAGGGGCTGGACGCGACGGTGCGGCGGCGCAACCTGCGCCACGC
CTTCGCCCTGGCGCCCGCCAGCGATGTTCGCGGGCTGCACCTGGCACTGGTGGACGACGTGCTCACCACCGGGGCCACCG
CCGAGCGCCTTTCCCGCCTGTTGTGCCGGGCGGGCGCCGCGCGGGTCGACGTCTACTGCCTGGCGCGCACGCCGAAGCCC
GGCTGA

Domains

Predicted by InterProScan.

Double zinc ribbon domain (DZR_2)

(9-65)

Phosphoribosyl transferase domain (Pribosyltran)

(139-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

38.174

100

0.382