Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   BAMTA208_RS01605 Genome accession   NC_017188
Coordinates   306665..307063 (-) Length   132 a.a.
NCBI ID   WP_013350967.1    Uniprot ID   A0A9P1JDU7
Organism   Bacillus amyloliquefaciens TA208     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 301665..312063
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAMTA208_RS01580 (BAMTA208_01515) - 301835..303037 (+) 1203 WP_013350962.1 GTP-binding protein -
  BAMTA208_RS01585 (BAMTA208_01520) - 303101..304237 (+) 1137 WP_014469722.1 zinc-dependent alcohol dehydrogenase -
  BAMTA208_RS01590 (BAMTA208_01525) - 304252..304686 (+) 435 WP_013350964.1 RDD family protein -
  BAMTA208_RS01595 (BAMTA208_01530) - 304760..305083 (+) 324 WP_013350965.1 YckD family protein -
  BAMTA208_RS01600 (BAMTA208_01535) - 305188..306624 (+) 1437 WP_013350966.1 glycoside hydrolase family 1 protein -
  BAMTA208_RS01605 (BAMTA208_01540) nin/comJ 306665..307063 (-) 399 WP_013350967.1 competence protein ComJ Regulator
  BAMTA208_RS01610 (BAMTA208_01545) nucA/comI 307084..307521 (-) 438 WP_013350968.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  BAMTA208_RS01615 (BAMTA208_01550) hxlB 307872..308429 (-) 558 WP_013350969.1 6-phospho-3-hexuloisomerase -
  BAMTA208_RS01620 (BAMTA208_01555) hxlA 308426..309061 (-) 636 WP_013350970.1 3-hexulose-6-phosphate synthase -
  BAMTA208_RS01625 (BAMTA208_01560) - 309293..309655 (+) 363 WP_013350971.1 winged helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14942.92 Da        Isoelectric Point: 4.4508

>NTDB_id=45148 BAMTA208_RS01605 WP_013350967.1 306665..307063(-) (nin/comJ) [Bacillus amyloliquefaciens TA208]
MIKSWKPQELTISYHQFTIFQKDSEPPVIDWTDEAIEKGYAEADDAVSFEAGRNTKAFIVLRLNTNEPVPSYEKKATVPF
EAVKDGIEIESVMSKRLFFDLPKGRYSLTCYSVPAEISDLHADTYIIDAAAM

Nucleotide


Download         Length: 399 bp        

>NTDB_id=45148 BAMTA208_RS01605 WP_013350967.1 306665..307063(-) (nin/comJ) [Bacillus amyloliquefaciens TA208]
TTGATTAAATCATGGAAACCGCAAGAACTGACCATTTCTTATCATCAATTTACAATCTTCCAAAAAGATTCAGAACCGCC
TGTTATCGATTGGACCGATGAAGCCATTGAAAAAGGATACGCGGAGGCTGACGATGCTGTTTCATTTGAAGCAGGGAGAA
ATACGAAGGCATTTATCGTCCTGAGGCTGAACACAAATGAGCCGGTGCCATCCTATGAGAAAAAAGCGACTGTTCCCTTC
GAGGCTGTAAAAGATGGGATTGAAATTGAAAGCGTGATGTCAAAAAGGCTTTTCTTCGATCTTCCGAAAGGCCGATACAG
CCTTACCTGTTATTCAGTGCCTGCCGAAATATCCGATCTTCATGCAGATACGTATATTATTGATGCGGCCGCAATGTAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

76.515

100

0.765

Multiple sequence alignment