Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HQ939_RS08070 Genome accession   NZ_CP054198
Coordinates   1571842..1572330 (-) Length   162 a.a.
NCBI ID   WP_021112584.1    Uniprot ID   A0A084EF36
Organism   Glaesserella parasuis strain YHP170504     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1566842..1577330
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HQ939_RS08045 (HQ939_08055) - 1566912..1567241 (-) 330 WP_021112552.1 hypothetical protein -
  HQ939_RS08050 (HQ939_08060) - 1567340..1567666 (-) 327 WP_021112561.1 hypothetical protein -
  HQ939_RS08055 (HQ939_08065) - 1567715..1568152 (-) 438 WP_021112535.1 STY4534 family ICE replication protein -
  HQ939_RS08060 (HQ939_08070) - 1569009..1571036 (-) 2028 WP_021112534.1 DNA topoisomerase III -
  HQ939_RS08065 (HQ939_08075) - 1571266..1571745 (-) 480 WP_021112590.1 hypothetical protein -
  HQ939_RS08070 (HQ939_08080) ssb 1571842..1572330 (-) 489 WP_021112584.1 single-stranded DNA-binding protein Machinery gene
  HQ939_RS08075 (HQ939_08085) - 1572643..1573122 (-) 480 WP_021112594.1 DUF3158 family protein -
  HQ939_RS08080 (HQ939_08090) - 1573127..1573867 (-) 741 WP_021112564.1 PFL_4669 family integrating conjugative element protein -
  HQ939_RS08085 (HQ939_08095) - 1574325..1575596 (-) 1272 WP_021112592.1 STY4528 family pathogenicity island replication protein -
  HQ939_RS08090 (HQ939_08100) - 1575666..1576226 (-) 561 WP_021112531.1 DUF2857 domain-containing protein -

Sequence

Protein


Download         Length: 162 a.a.        Molecular weight: 18346.53 Da        Isoelectric Point: 6.7622

>NTDB_id=451403 HQ939_RS08070 WP_021112584.1 1571842..1572330(-) (ssb) [Glaesserella parasuis strain YHP170504]
MSGVNKVTIIGNLGTDPDVRTMPNGDAVTTLSVATSDVWNDKNTGERKEVTEWHRIVLFRRQAEVAGQYLHKGSKVYIEG
KLKTRKWQDQNGVDRYTTEIWASELQMLDSKPSNFPPPLGESQTKSQQKHSPQPEPPMDNFDDDIPFSPIHHGFSKHSIY
VI

Nucleotide


Download         Length: 489 bp        

>NTDB_id=451403 HQ939_RS08070 WP_021112584.1 1571842..1572330(-) (ssb) [Glaesserella parasuis strain YHP170504]
ATGTCTGGCGTGAATAAGGTCACAATTATTGGTAATCTTGGTACAGATCCTGATGTTCGTACTATGCCTAATGGTGATGC
TGTAACAACACTCAGTGTTGCTACAAGTGATGTGTGGAATGATAAGAATACGGGGGAACGGAAAGAAGTCACTGAATGGC
ACCGTATTGTATTATTTCGCCGTCAAGCTGAAGTGGCAGGGCAATACTTACATAAAGGTTCGAAAGTATACATTGAAGGA
AAATTGAAAACACGCAAATGGCAAGATCAAAATGGTGTCGATCGCTATACCACAGAAATTTGGGCTTCTGAGTTACAGAT
GTTAGACAGTAAACCAAGCAATTTTCCACCACCTTTAGGTGAGTCGCAGACAAAATCTCAACAAAAACACTCTCCACAAC
CTGAACCACCGATGGATAATTTCGATGATGATATTCCATTTTCTCCAATTCACCACGGTTTTAGCAAACATTCTATTTAT
GTAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A084EF36

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

63.333

100

0.704
  ssb Vibrio cholerae strain A1552

50.575

100

0.543
  ssb Neisseria meningitidis MC58

43.353

100

0.463
  ssb Neisseria gonorrhoeae MS11

42.775

100

0.457