Detailed information
Bioinformatically predicted
Overview
| Name | rarA | Type | Machinery gene |
| Locus tag | C730_RS05270 | Genome accession | NC_018938 |
| Coordinates | 1088893..1090068 (+) | Length | 391 a.a. |
| NCBI ID | WP_000060246.1 | Uniprot ID | O25670 |
| Organism | Helicobacter pylori Rif2 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 1083893..1095068
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C730_RS05245 (C730_05280) | - | 1084148..1085044 (+) | 897 | WP_000697557.1 | OriC activity response regulator | - |
| C730_RS05250 (C730_05290) | - | 1085300..1086136 (+) | 837 | WP_000556224.1 | 5'-3' exonuclease | - |
| C730_RS05255 (C730_05295) | - | 1086231..1087481 (-) | 1251 | WP_001199552.1 | hypothetical protein | - |
| C730_RS05260 (C730_05300) | - | 1087649..1088515 (+) | 867 | WP_000045822.1 | DnaJ family protein | - |
| C730_RS05265 (C730_05305) | - | 1088525..1088896 (+) | 372 | WP_000332994.1 | heat shock protein transcriptional repressor HspR | - |
| C730_RS05270 (C730_05310) | rarA | 1088893..1090068 (+) | 1176 | WP_000060246.1 | replication-associated recombination protein A | Machinery gene |
| C730_RS05275 (C730_05315) | fur | 1090228..1090680 (+) | 453 | WP_000824996.1 | ferric iron uptake transcriptional regulator | - |
| C730_RS05280 (C730_05320) | - | 1090700..1091197 (-) | 498 | WP_001241701.1 | DUF2147 domain-containing protein | - |
| C730_RS05285 (C730_05325) | - | 1091194..1091730 (-) | 537 | WP_000964040.1 | YhcH/YjgK/YiaL family protein | - |
| C730_RS05290 (C730_05330) | fliY | 1091759..1092622 (-) | 864 | WP_001150629.1 | flagellar motor switch protein FliY | - |
| C730_RS05295 (C730_05335) | fliM | 1092626..1093690 (-) | 1065 | WP_000763575.1 | flagellar motor switch protein FliM | - |
| C730_RS05300 (C730_05340) | - | 1093683..1094450 (-) | 768 | WP_000602430.1 | RNA polymerase sigma factor FliA | - |
| C730_RS05305 | - | 1094428..1094742 (-) | 315 | WP_000868000.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 391 a.a. Molecular weight: 43793.44 Da Isoelectric Point: 8.0443
>NTDB_id=45126 C730_RS05270 WP_000060246.1 1088893..1090068(+) (rarA) [Helicobacter pylori Rif2]
MSLTSLLNPKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIAYMLERPILLFNATDFKLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDRLCAK
ALTLLKKQIEPGAKTYLLNNSAGDARALLNLLDLSAKIEDPITLKTLQSLRPHSLNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNALNLAASCLFAVKQIGYPEARIILSQCVIYLACSPKSNTAY
RAINQALDCVQKGSLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLDLVSSQGIGFEKTLLEWLDKIRN
MSLTSLLNPKSLEDFLGQEHLVGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIAYMLERPILLFNATDFKLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDRLCAK
ALTLLKKQIEPGAKTYLLNNSAGDARALLNLLDLSAKIEDPITLKTLQSLRPHSLNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNALNLAASCLFAVKQIGYPEARIILSQCVIYLACSPKSNTAY
RAINQALDCVQKGSLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLDLVSSQGIGFEKTLLEWLDKIRN
Nucleotide
Download Length: 1176 bp
>NTDB_id=45126 C730_RS05270 WP_000060246.1 1088893..1090068(+) (rarA) [Helicobacter pylori Rif2]
ATGAGCCTGACTTCGCTTTTAAACCCAAAAAGCCTAGAAGATTTTTTAGGCCAAGAGCATTTAGTAGGGAAAGACGCCCC
CTTATTTAAAGCCCTACAATCCAAACACTTCCCCCATGCCTTTTTCTATGGCCCTCCTGGCGTGGGTAAAACAAGCCTGG
CTCAAATCATCGCCTATATGCTAGAGCGCCCCATTCTTTTATTCAATGCGACGGATTTTAAATTAGAGGATTTGCGCCTT
AAGCTTAAAAATTACCAAAATACCCTTTTAAAACCCGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
AGAATTTTTACTCCCCATTATGGAAAAAGATCACGCTTTAATTTTAGGGGCTAGCACGCAAGATCCTAATTACAGCCTAA
GCCATGCGATCCGATCAAGAAGTTTTATTTTTGAATTAACCCCCCTAAACAAGAGCGATTTAGACAGGCTTTGCGCTAAA
GCTTTAACATTGCTCAAAAAACAAATAGAGCCTGGCGCTAAAACCTATCTTTTAAACAACAGCGCTGGCGACGCTAGAGC
GTTATTAAACCTTTTAGATTTGAGCGCTAAAATAGAAGATCCTATCACTTTAAAAACGCTACAATCCTTACGGCCTCATA
GCCTAAATGATGGATCTTATAGCGATGATACGCATTATAACCTTACTAGCGCGTTAATCAAATCTTTAAGAGGGAGCGAT
GAAAACGCTTCCATCTATTATCTGGCGCGCTTGATTGCTGGCGGGGAAAACCCGGAATTTATCGCCAGAAGGCTGGTGAT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCGAACGCCCTTAATTTAGCCGCTTCTTGTTTGTTTGCAGTCAAACAAA
TCGGCTACCCTGAAGCGCGCATCATTTTAAGCCAATGCGTGATTTATCTGGCTTGTTCGCCCAAGTCTAACACGGCTTAT
AGAGCGATCAATCAGGCTTTGGATTGCGTTCAAAAAGGCTCACTCTACCCTATTCCTAAACACCTGCTGCCTAACGCTAA
AGATTACCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTGGAAAAACCCCTAGATTTGGTTTCTTCTC
AAGGCATAGGATTTGAAAAAACCCTTTTAGAATGGCTTGATAAGATAAGAAATTGA
ATGAGCCTGACTTCGCTTTTAAACCCAAAAAGCCTAGAAGATTTTTTAGGCCAAGAGCATTTAGTAGGGAAAGACGCCCC
CTTATTTAAAGCCCTACAATCCAAACACTTCCCCCATGCCTTTTTCTATGGCCCTCCTGGCGTGGGTAAAACAAGCCTGG
CTCAAATCATCGCCTATATGCTAGAGCGCCCCATTCTTTTATTCAATGCGACGGATTTTAAATTAGAGGATTTGCGCCTT
AAGCTTAAAAATTACCAAAATACCCTTTTAAAACCCGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
AGAATTTTTACTCCCCATTATGGAAAAAGATCACGCTTTAATTTTAGGGGCTAGCACGCAAGATCCTAATTACAGCCTAA
GCCATGCGATCCGATCAAGAAGTTTTATTTTTGAATTAACCCCCCTAAACAAGAGCGATTTAGACAGGCTTTGCGCTAAA
GCTTTAACATTGCTCAAAAAACAAATAGAGCCTGGCGCTAAAACCTATCTTTTAAACAACAGCGCTGGCGACGCTAGAGC
GTTATTAAACCTTTTAGATTTGAGCGCTAAAATAGAAGATCCTATCACTTTAAAAACGCTACAATCCTTACGGCCTCATA
GCCTAAATGATGGATCTTATAGCGATGATACGCATTATAACCTTACTAGCGCGTTAATCAAATCTTTAAGAGGGAGCGAT
GAAAACGCTTCCATCTATTATCTGGCGCGCTTGATTGCTGGCGGGGAAAACCCGGAATTTATCGCCAGAAGGCTGGTGAT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCGAACGCCCTTAATTTAGCCGCTTCTTGTTTGTTTGCAGTCAAACAAA
TCGGCTACCCTGAAGCGCGCATCATTTTAAGCCAATGCGTGATTTATCTGGCTTGTTCGCCCAAGTCTAACACGGCTTAT
AGAGCGATCAATCAGGCTTTGGATTGCGTTCAAAAAGGCTCACTCTACCCTATTCCTAAACACCTGCTGCCTAACGCTAA
AGATTACCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTGGAAAAACCCCTAGATTTGGTTTCTTCTC
AAGGCATAGGATTTGAAAAAACCCTTTTAGAATGGCTTGATAAGATAAGAAATTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| rarA | Bacillus subtilis subsp. subtilis str. 168 |
37.379 |
100 |
0.394 |