Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   HRJ37_RS08280 Genome accession   NZ_CP054136
Coordinates   1612493..1613272 (+) Length   259 a.a.
NCBI ID   WP_007499612.1    Uniprot ID   A0A9X0FX88
Organism   Bacillus altitudinis strain 11-1-1     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1607493..1618272
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HRJ37_RS08260 (HRJ37_08260) trmFO 1608197..1609501 (+) 1305 WP_007499618.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  HRJ37_RS08265 (HRJ37_08265) xerC 1609564..1610481 (+) 918 WP_007499616.1 tyrosine recombinase XerC -
  HRJ37_RS08270 (HRJ37_08270) hslV 1610496..1611041 (+) 546 WP_007499614.1 ATP-dependent protease subunit HslV -
  HRJ37_RS08275 (HRJ37_08275) hslU 1611058..1612458 (+) 1401 WP_008344818.1 HslU--HslV peptidase ATPase subunit -
  HRJ37_RS08280 (HRJ37_08280) codY 1612493..1613272 (+) 780 WP_007499612.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  HRJ37_RS08285 (HRJ37_08285) flgB 1613562..1613951 (+) 390 WP_173407993.1 flagellar basal body rod protein FlgB -
  HRJ37_RS08290 (HRJ37_08290) flgC 1613951..1614403 (+) 453 WP_007499610.1 flagellar basal body rod protein FlgC -
  HRJ37_RS08295 (HRJ37_08295) fliE 1614415..1614732 (+) 318 WP_007499609.1 flagellar hook-basal body complex protein FliE -
  HRJ37_RS08300 (HRJ37_08300) fliF 1614783..1616375 (+) 1593 WP_017359091.1 flagellar basal-body MS-ring/collar protein FliF -
  HRJ37_RS08305 (HRJ37_08305) fliG 1616387..1617403 (+) 1017 WP_034281776.1 flagellar motor switch protein FliG -
  HRJ37_RS08310 (HRJ37_08310) fliH 1617396..1618160 (+) 765 WP_173407994.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28976.19 Da        Isoelectric Point: 4.6467

>NTDB_id=450989 HRJ37_RS08280 WP_007499612.1 1612493..1613272(+) (codY) [Bacillus altitudinis strain 11-1-1]
MALLQKTRIINSMLQDAAGKPVNFKEMAETLRDVIDSNIFVLSRRGKLLGYSINQQIENARMKKMLEDRQFPEEYTKSLF
NVPETSSNLDINSEYTAFPIENRDLFQSGLTTIVPIIGGGDRLGTLILSRLQDTFTDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=450989 HRJ37_RS08280 WP_007499612.1 1612493..1613272(+) (codY) [Bacillus altitudinis strain 11-1-1]
ATGGCGTTACTACAAAAAACAAGGATTATTAACTCGATGCTGCAAGATGCAGCGGGGAAGCCGGTTAATTTTAAAGAAAT
GGCAGAAACATTGAGAGATGTCATTGATTCAAACATTTTCGTATTAAGCAGAAGAGGGAAGCTTCTTGGCTACTCCATTA
ACCAGCAGATTGAAAATGCACGTATGAAAAAAATGCTGGAAGATCGTCAGTTCCCTGAAGAATATACAAAAAGCTTATTC
AATGTCCCTGAAACATCTTCAAACCTTGACATCAACAGTGAGTACACAGCTTTCCCGATTGAGAACCGTGATTTATTCCA
ATCAGGTTTGACAACGATTGTACCAATCATCGGAGGCGGAGACCGCTTAGGGACGTTAATCCTTTCTCGTTTGCAAGATA
CATTCACAGATGATGATTTAATTCTTGCTGAATACGGCGCAACAGTTGTAGGGATGGAGATTCTTCGCGAGAAAGCGGAA
GAAATTGAAGAAGAAGCAAGAAGTAAAGCGGTTGTTCAAATGGCAATCAGTTCTCTTTCATATAGTGAGCTTGAGGCGAT
TGAGCATATCTTTGAAGAACTTGATGGCAACGAAGGGCTGCTTGTGGCAAGTAAGATTGCTGACCGTGTAGGAATCACTC
GTTCAGTGATCGTAAACGCACTTCGTAAATTAGAAAGTGCAGGCGTTATTGAATCTCGTTCCCTTGGAATGAAGGGAACA
TACATCAAAGTATTAAACAACAAATTTTTAATTGAACTTGAAAATTTAAAATCTCACTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

96.525

100

0.965
  codY Lactococcus lactis subsp. lactis strain DGCC12653

48.031

98.069

0.471