Detailed information NTG0450930

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: HQ912_RS24395
• Genome accession: NZ_CP054128
• Coordinates: 5485264..5486133 (+)
• Length: 289 a.a.
• NCBI ID: WP_047229861.1
• Uniprot ID: -
• Organism: Pseudomonas sp. MPDS
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5480264..5491133

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HQ912_RS24370 (HQ912_24370)	-	5480444..5480740 (+)	297	WP_047229856.1	DUF2845 domain-containing protein	-
HQ912_RS24375 (HQ912_24375)	-	5481063..5481416 (-)	354	WP_047229857.1	BON domain-containing protein	-
HQ912_RS24380 (HQ912_24380)	pilA	5481697..5482116 (-)	420	WP_047229858.1	pilin	Machinery gene
HQ912_RS24385 (HQ912_24385)	pilB	5482342..5484042 (+)	1701	WP_047229859.1	type IV-A pilus assembly ATPase PilB	Machinery gene
HQ912_RS24390 (HQ912_24390)	pilC	5484045..5485262 (+)	1218	WP_076386354.1	type II secretion system F family protein	Machinery gene
HQ912_RS24395 (HQ912_24395)	pilD	5485264..5486133 (+)	870	WP_047229861.1	prepilin peptidase	Machinery gene
HQ912_RS24400 (HQ912_24400)	coaE	5486145..5486768 (+)	624	WP_047229862.1	dephospho-CoA kinase	-
HQ912_RS24405 (HQ912_24405)	yacG	5486765..5486965 (+)	201	WP_047229863.1	DNA gyrase inhibitor YacG	-
HQ912_RS24410 (HQ912_24410)	-	5486998..5487213 (-)	216	WP_076386357.1	hypothetical protein	-
HQ912_RS24415 (HQ912_24415)	-	5487277..5487963 (-)	687	WP_047229865.1	energy-coupling factor ABC transporter permease	-
HQ912_RS24420 (HQ912_24420)	-	5488109..5488735 (+)	627	WP_047229866.1	DUF1780 domain-containing protein	-
HQ912_RS24425 (HQ912_24425)	-	5488732..5489259 (+)	528	WP_107322954.1	MOSC domain-containing protein	-
HQ912_RS24430 (HQ912_24430)	-	5489312..5489485 (+)	174	WP_076386361.1	DUF3094 family protein	-
HQ912_RS24435 (HQ912_24435)	-	5489546..5490844 (+)	1299	WP_047229869.1	NAD(P)/FAD-dependent oxidoreductase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 31869.04 Da
• Isoelectric Point: 8.0377

>NTDB_id=450930 HQ912_RS24395 WP_047229861.1 5485264..5486133(+) (pilD) [Pseudomonas sp. MPDS]
MPLTEFFALYPLAFVLAALLLGLIIGSFLNVLVWRLPKMLSREWRLQAHDLLGLPAEAPGPVYNLMLPHSQCPHCGHRIR
AWENIPLLSYLALRGRCSSCAAPIGRRYPLTELACGILSAFVAWYFGFGWQAAMVMVLTWGLLGMSLIDAEHQLLPDTLV
LPLLWLGLIVNSFGLFVPLNQAMWGAVAGYLALWSVFWVFKLITGKEGMGYGDFKLLAMLGAWGGWQILPLTLLLSSLVG
AVIGVIVLRLRDAPTSTQIPFGPYLAIAGWIALLWGGQITDFYWQSVGS

Nucleotide

• Length: 870 bp

>NTDB_id=450930 HQ912_RS24395 WP_047229861.1 5485264..5486133(+) (pilD) [Pseudomonas sp. MPDS]
ATGCCCCTGACCGAATTTTTCGCGCTGTATCCCCTGGCCTTTGTGCTCGCCGCTTTACTGCTCGGACTGATCATCGGCAG
TTTCCTCAACGTCCTGGTGTGGCGCCTGCCCAAGATGCTCTCGCGCGAATGGCGGCTGCAAGCCCATGACTTGCTGGGCC
TGCCCGCCGAAGCCCCTGGCCCGGTCTACAACCTGATGCTGCCGCATTCCCAGTGCCCGCACTGCGGCCACCGCATCCGG
GCCTGGGAAAACATTCCGCTATTGAGTTACCTGGCATTGCGCGGTCGTTGCTCCAGTTGTGCCGCGCCCATCGGCCGGCG
CTATCCCCTGACCGAACTGGCCTGCGGCATCCTGTCGGCGTTCGTCGCCTGGTATTTCGGCTTTGGCTGGCAGGCCGCAA
TGGTGATGGTGCTGACCTGGGGCCTGCTGGGCATGAGCCTGATCGATGCCGAGCACCAATTGTTGCCTGACACCCTGGTG
CTGCCGTTGTTGTGGCTGGGCTTGATCGTCAACAGCTTCGGGTTGTTCGTCCCCTTGAATCAGGCGATGTGGGGCGCCGT
GGCCGGCTATCTGGCGCTGTGGTCGGTGTTCTGGGTGTTCAAATTGATCACTGGCAAGGAAGGCATGGGCTACGGGGATT
TCAAGCTGCTGGCGATGCTGGGCGCCTGGGGTGGCTGGCAGATCCTGCCACTGACGTTGCTGTTGTCATCGCTGGTGGGC
GCCGTTATCGGGGTCATTGTGCTGCGCCTGCGTGATGCTCCGACATCGACGCAAATCCCCTTTGGGCCCTATCTGGCCAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTCTGTCGGTTCCTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (136-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	52.113	98.27	0.512
pilD	Vibrio campbellii strain DS40M4	50.175	98.616	0.495
pilD	Neisseria gonorrhoeae MS11	46.69	99.308	0.464
pilD	Acinetobacter baumannii D1279779	48.905	94.81	0.464
pilD	Acinetobacter nosocomialis M2	48.905	94.81	0.464