Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   I6G43_RS03215 Genome accession   NZ_CP065706
Coordinates   685105..685893 (+) Length   262 a.a.
NCBI ID   WP_004246012.1    Uniprot ID   -
Organism   Streptococcus oralis strain FDAARGOS_886     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 680105..690893
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G43_RS03200 (I6G43_03200) - 680262..681017 (-) 756 WP_038806323.1 hypothetical protein -
  I6G43_RS03205 (I6G43_03205) - 681621..682937 (-) 1317 WP_038806322.1 FAD-containing oxidoreductase -
  I6G43_RS03210 (I6G43_03210) - 683247..684824 (+) 1578 WP_038806321.1 DEAD/DEAH box helicase -
  I6G43_RS03215 (I6G43_03215) codY 685105..685893 (+) 789 WP_004246012.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  I6G43_RS03220 (I6G43_03220) - 685893..686468 (+) 576 WP_038806320.1 cysteine hydrolase family protein -
  I6G43_RS03230 (I6G43_03230) - 686902..688179 (+) 1278 WP_038806319.1 ABC transporter permease -
  I6G43_RS03235 (I6G43_03235) vex2 688192..688839 (+) 648 WP_000173735.1 ABC transporter ATP-binding subunit Vex2 -
  I6G43_RS03240 (I6G43_03240) vex3 688890..690269 (+) 1380 WP_000903001.1 ABC transporter permease subunit Vex3 -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29708.02 Da        Isoelectric Point: 5.2441

>NTDB_id=450716 I6G43_RS03215 WP_004246012.1 685105..685893(+) (codY) [Streptococcus oralis strain FDAARGOS_886]
MAHLLEKTRKITSILKRSEEQMQDELPYNAITRQLADIIDCNACIVNSKGRLLGYFMRYKTNTDRVEQFFQTKTFPDDYV
QGANMIYDTEANLPVEHDLTIFPVESRADFPDGLTTIAPIHVSGIRLGSLIIWRNDKKFEDEDLILVEIASTVVGIQLLN
FQREEDEKNIRRRTAVTMAVNTLSYSELRAVSAILSELNGNEGQLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVLISDIFEEVKKRDY

Nucleotide


Download         Length: 789 bp        

>NTDB_id=450716 I6G43_RS03215 WP_004246012.1 685105..685893(+) (codY) [Streptococcus oralis strain FDAARGOS_886]
ATGGCACATTTATTAGAAAAAACAAGAAAAATTACATCAATTTTAAAACGCTCAGAAGAGCAAATGCAGGATGAACTTCC
ATACAATGCCATTACACGTCAACTAGCAGACATTATTGATTGCAATGCCTGCATTGTCAATAGCAAGGGTCGTCTCTTGG
GCTACTTTATGCGCTATAAAACTAATACAGACCGTGTAGAGCAGTTTTTCCAAACCAAGACGTTCCCAGATGACTATGTA
CAAGGGGCAAACATGATCTATGATACAGAAGCCAATCTTCCTGTTGAACATGATTTGACCATTTTTCCTGTAGAGAGCCG
TGCGGATTTTCCAGATGGTTTGACAACCATTGCTCCCATTCATGTATCAGGGATTCGCCTAGGTTCCTTGATTATTTGGC
GCAATGATAAGAAATTTGAAGATGAGGATTTGATTCTTGTTGAGATTGCGAGCACAGTTGTGGGAATTCAACTCTTGAAC
TTCCAACGCGAAGAAGATGAGAAAAATATCCGTCGTCGTACGGCTGTAACTATGGCAGTCAATACCCTTTCCTACTCAGA
ACTTCGTGCTGTTTCAGCTATTTTATCTGAGCTAAATGGAAATGAAGGACAATTGACCGCATCTGTCATTGCAGACCGTA
TCGGTATCACGCGCTCAGTGATCGTCAATGCTCTCCGTAAGCTAGAGTCGGCAGGAATTATTGAAAGCCGTTCACTAGGA
ATGAAGGGAACATATCTCAAGGTATTGATTTCAGATATCTTTGAGGAAGTGAAAAAGAGGGACTACTAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(3-182)

CodY helix-turn-helix domain (HTH_CodY)

(202-258)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

62.595

100

0.626
  codY Bacillus subtilis subsp. subtilis str. 168

49.187

93.893

0.462