Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   FOC63_RS05610 Genome accession   NZ_CP054015
Coordinates   1111455..1112384 (+) Length   309 a.a.
NCBI ID   WP_009853407.1    Uniprot ID   A0A060RH00
Organism   Streptococcus gallolyticus strain FDAARGOS_755     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1106455..1117384
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC63_RS05590 (FOC63_05590) - 1106675..1108330 (+) 1656 WP_009853403.1 peptide ABC transporter substrate-binding protein -
  FOC63_RS05595 (FOC63_05595) - 1108441..1109355 (+) 915 WP_009853404.1 ABC transporter permease -
  FOC63_RS05600 (FOC63_05600) - 1109366..1110397 (+) 1032 WP_009853405.1 ABC transporter permease -
  FOC63_RS05605 (FOC63_05605) oppD 1110409..1111455 (+) 1047 WP_009853406.1 ABC transporter ATP-binding protein Regulator
  FOC63_RS05610 (FOC63_05610) amiF 1111455..1112384 (+) 930 WP_009853407.1 ABC transporter ATP-binding protein Regulator

Sequence

Protein


Download         Length: 309 a.a.        Molecular weight: 35009.73 Da        Isoelectric Point: 5.4462

>NTDB_id=450154 FOC63_RS05610 WP_009853407.1 1111455..1112384(+) (amiF) [Streptococcus gallolyticus strain FDAARGOS_755]
MTENRKKLVELKNVSLTFNEGKKNEVKAIDNISFDIYEGEVFGLVGESGSGKTTVGRAILKLYDINKGEIDFDGETISHL
KGKELHEFRKNAQMIFQDPQASLNGRMKIRDIVAEGLDIHKLVNSKEERDQKVQDLLALVGLNKDHSTRYPHEFSGGQRQ
RIGIARALAVEPKFIIADEPISALDVSIQAQVVNLMQKLQREQGLTYLFIAHDLSMVKYISDRIGVMHWGKMLEIGTSDD
VYNHPIHPYTKSLLTAIPEPDPESERNRIHEEYDPSAELDGQPREMREITPGHFVLCTEAEAEAYKQEL

Nucleotide


Download         Length: 930 bp        

>NTDB_id=450154 FOC63_RS05610 WP_009853407.1 1111455..1112384(+) (amiF) [Streptococcus gallolyticus strain FDAARGOS_755]
ATGACTGAAAATAGAAAAAAGCTTGTTGAACTTAAAAATGTATCATTGACTTTTAACGAAGGTAAAAAGAACGAAGTAAA
AGCTATTGATAATATCAGTTTTGATATTTACGAAGGTGAAGTTTTCGGTCTTGTTGGAGAATCAGGTTCTGGTAAGACAA
CCGTTGGTCGTGCTATTTTGAAATTGTACGACATTAATAAAGGTGAAATTGATTTTGATGGCGAAACTATCTCTCACCTT
AAAGGGAAAGAATTGCACGAATTCCGTAAAAATGCTCAAATGATTTTCCAAGACCCACAAGCTAGTCTTAATGGTCGTAT
GAAAATTCGTGACATTGTTGCGGAAGGACTTGACATCCATAAATTAGTTAACAGTAAAGAAGAACGTGACCAAAAAGTTC
AAGATTTACTTGCTTTAGTTGGACTTAACAAAGACCATTCAACACGCTATCCACATGAATTTTCAGGTGGACAACGTCAA
CGTATTGGTATCGCTCGTGCTCTTGCTGTTGAACCAAAGTTCATCATTGCCGATGAACCAATTTCAGCCCTTGACGTGTC
AATCCAAGCTCAAGTTGTTAACCTTATGCAAAAACTTCAAAGAGAACAGGGGTTAACATATCTCTTTATCGCTCACGATT
TGTCAATGGTTAAATACATCTCAGATCGTATTGGGGTTATGCACTGGGGTAAAATGCTTGAAATTGGAACATCTGATGAT
GTCTATAATCATCCAATTCACCCATATACTAAGAGCTTATTGACTGCAATTCCAGAACCAGACCCAGAATCTGAAAGAAA
TCGTATCCATGAAGAATACGATCCAAGTGCAGAACTAGATGGCCAACCACGTGAAATGCGTGAAATTACACCTGGCCACT
TTGTTCTTTGTACAGAAGCAGAAGCAGAAGCTTATAAACAAGAATTATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(30-181)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A060RH00

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMD-9

54.426

98.706

0.537
  amiF Streptococcus salivarius strain HSISS4

54.426

98.706

0.537
  amiF Streptococcus thermophilus LMG 18311

54.098

98.706

0.534